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cnvtools
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Calculate the CNV frequency in a dataset
genomicranges
cnvtools
6.6 years ago
julrodr80
▴ 30
0
votes
0
replies
1.3k
views
crlmm: Does it support Illumina BeadChip platform HumanCore-24v1-0_A
cnv
cnvtools
crlmm
7.8 years ago
enriquev
• 0
0
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1
reply
1.6k
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CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
ahinsahr11
• 0
0
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4
replies
1.9k
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Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 8.5 years ago by
Günter Klambauer
▴ 540 • written 8.5 years ago by
vakul.mohanty
▴ 20
2
votes
2
replies
1.8k
views
Adjusting the defaults in the cn.MOPs Package
cn.mops
cnv
cnvtools
updated 8.8 years ago by
Günter Klambauer
▴ 540 • written 8.8 years ago by
voksdvoks
• 0
2
votes
8
replies
2.4k
views
Copy Number Variation in the cn.mops Package
cn.mops
cnv
cnvtools
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
bioconductor
• 0
0
votes
1
reply
905
views
CNVtools installation error - not available
CNVtools
CNVtools
updated 14.3 years ago by
Sean Davis
21k • written 14.3 years ago by
Bryan Hepworth
▴ 30
0
votes
0
replies
867
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CNVtools/snpMatrix
CNVtools
CNVtools
14.5 years ago
Vincent Plagnol
▴ 10
8 results • Page
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Comment: DSS CpG coverage threshold
by
j.gilbert
• 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Comment: deseq2 results
by
sajadahmad41454
• 0
could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…
Answer: normalization using Deseq2
by
ATpoint
★ 4.1k
counts(dds, normalized=TRUE)
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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