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complex-design
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3
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4
replies
1.1k
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Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
ML18
▴ 10
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.2 years ago by
m.van_iterson
▴ 20 • written 8.2 years ago by
roser.navarro
• 0
9
votes
21
replies
5.3k
views
limma - complex design with paired samples, sex and batch effect
limma
paired samples
complex-design
8.3 years ago
aec
▴ 90
7
votes
6
replies
3.9k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Guido Hooiveld
★ 3.9k
1
vote
1
reply
2.9k
views
Factorial Design with DESeq2; contrast problem.
deseq2
multiple factor design
complex-design
updated 9.1 years ago by
Michael Love
41k • written 9.1 years ago by
sifujio
• 0
1
vote
3
replies
6.6k
views
Combat - error - system is computationally singular
combat
software error
rnaseq
complex-design
updated 9.5 years ago by
Peter Langfelder
★ 3.0k • written 9.5 years ago by
Stefano Mangiola
▴ 10
7
votes
11
replies
2.3k
views
Using edgeR on pre-post treatment control design
edgeR
complex-design
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
lwc628
▴ 20
7 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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