Bioconductor Complex-design

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limma complex-design paired design

updated 7.9 years ago by Aaron Lun ★ 29k • written 7.9 years ago by ML18 ▴ 10

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3.2k

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rnaseqpower sspa sample size sequencing complex-design

updated 10.0 years ago by m.van_iterson ▴ 20 • written 10.0 years ago by roser.navarro • 0

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7.0k

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limma paired samples complex-design

10.1 years ago aec ▴ 90

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4.9k

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limma model matrix limma design matrix complex-design

updated 10.6 years ago by Aaron Lun ★ 29k • written 10.6 years ago by Guido Hooiveld ★ 4.1k

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3.4k

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deseq2 multiple factor design complex-design

updated 10.9 years ago by Michael Love 43k • written 10.9 years ago by sifujio • 0

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7.5k

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combat software error rnaseq complex-design

updated 11.3 years ago by Peter Langfelder ★ 3.0k • written 11.3 years ago by Stefano Mangiola ▴ 40

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3.1k

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edgeR complex-design

updated 11.3 years ago by James W. MacDonald 68k • written 11.3 years ago by lwc628 ▴ 20

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k