Bioconductor Model matrix

Showing : model matrix • reset

votes

replies

1.3k

views

limma model matrix linear regression

5.6 years ago agm • 0

vote

replies

1.6k

views

deseq2 model matrix experimental design multiple factor design

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by amye107 • 0

votes

replies

1.7k

views

deseq2 linear combination model matrix

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by sally_b86 • 0

votes

replies

1.4k

views

rnaseq edger statistics model matrix

updated 7.3 years ago by Steve Lianoglou ★ 13k • written 7.3 years ago by David R ▴ 90

votes

replies

29k

views

deseq2 design and contrast matrix model matrix

7.9 years ago mrigaya.mehra ▴ 10

votes

replies

2.0k

views

deseq2 differential gene expression model matrix

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by gregory.l.stone ▴ 10

votes

replies

2.8k

views

edger deseq2 model matrix differential expression

8.4 years ago ta65 • 0

votes

replies

3.4k

views

ballgown linear model model matrix custom model

8.9 years ago • updated 8.8 years ago sbcn ▴ 80

votes

replies

4.3k

views

limma model matrix limma design matrix complex-design

updated 9.6 years ago by Aaron Lun ★ 28k • written 9.6 years ago by Guido Hooiveld ★ 4.1k

votes

replies

5.7k

views

limma limma design matrix model matrix

updated 9.7 years ago by Aaron Lun ★ 28k • written 9.7 years ago by andrew.j.skelton73 ▴ 370

votes

replies

4.3k

views

edger design matrix model matrix

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by silvia.paolucci81 • 0

11 results • Page 1 of 1

Recent ...

Replies

Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0

Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…

Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Awards • All