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model matrix
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1.1k
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Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma
model matrix
linear regression
4.8 years ago
agm
• 0
1
vote
2
replies
1.4k
views
DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2
model matrix
experimental design
multiple factor design
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
amye107
• 0
0
votes
7
replies
1.4k
views
Model matrix not full rank
deseq2
linear combination
model matrix
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
sally_b86
• 0
2
votes
4
replies
1.2k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 6.6 years ago by
Steve Lianoglou
★ 13k • written 6.6 years ago by
David R
▴ 90
3
votes
6
replies
27k
views
Designing a contrast in DESEQ
deseq2
design and contrast matrix
model matrix
7.2 years ago
mrigaya.mehra
▴ 10
0
votes
8
replies
1.7k
views
DESeq2 glibc error
deseq2
differential gene expression
model matrix
updated 7.2 years ago by
Michael Love
41k • written 7.2 years ago by
gregory.l.stone
▴ 10
4
votes
6
replies
2.5k
views
Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger
deseq2
model matrix
differential expression
7.6 years ago
ta65
• 0
2
votes
7
replies
3.1k
views
ballgown custom models
ballgown
linear model
model matrix
custom model
8.1 years ago • updated 8.0 years ago
sbcn
▴ 80
7
votes
6
replies
3.9k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Guido Hooiveld
★ 3.9k
9
votes
2
replies
5.4k
views
Limma Model Matrix Understanding
limma
limma design matrix
model matrix
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
andrew.j.skelton73
▴ 370
2
votes
5
replies
3.8k
views
design model matrix for nested factors (edgeR)
edger
design matrix
model matrix
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
silvia.paolucci81
• 0
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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