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rnaseqpower
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA
RNASeqPower
DEGseq
written 15 months ago by
Jonathan
• 0
1
vote
3
replies
2.5k
views
featureCounts fails to load annotation file
featurecounts
rnas
RNASeqPower
16 months ago
yasmin.hilliam
▴ 10
2
votes
2
replies
874
views
Batch adjustment for cohort based RNA seq data
RNASeqPower
removeBatchEffect
cpm
Batcheffect
17 months ago
sukeshinik5
▴ 20
1
vote
2
replies
1.3k
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RNASeq time course analysis, missing time points for control
RNASeqData
RnaSeqSampleSize
RNASeq
RNASeqPower
2.2 years ago
drewhaydensteele
• 0
0
votes
1
reply
1.2k
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Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
Luke
• 0
1
vote
3
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1.7k
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower
edgeR
DifferentialExpression
limma
RNASeq
updated 2.8 years ago by
Gordon Smyth
53k • written 2.8 years ago by
Sara
• 0
0
votes
0
replies
891
views
Typo in citation for RNASeqPower
RNASeqPower
citation
3.7 years ago
stephenjjohnson
• 0
0
votes
3
replies
3.4k
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How to calculate coefficient of variation within group?
edgeR
limma
RNASeqPower
updated 4.0 years ago by
Gordon Smyth
53k • written 5.0 years ago by
Ahdee
▴ 60
0
votes
5
replies
3.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 10.0 years ago by
m.van_iterson
▴ 20 • written 10.0 years ago by
roser.navarro
• 0
0
votes
1
reply
1.6k
views
Depth or # of reads for RNASeqPower
rnaseqpower
11.3 years ago
drnknmstrr
• 0
0
votes
0
replies
1.4k
views
Power Calculation of multiple factors design of RNA-sequencing study
edgeR
DESeq
RNASeqPower
edgeR
DESeq
RNASeqPower
12.0 years ago
Guest User
★ 13k
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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