Showing : confounders • reset
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 6.0 years ago by ▴ 280 • written 6.0 years ago by ▴ 10
2
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6
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2.4k
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Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
limma limma-voom limma design matrix confounders
updated 7.5 years ago by ★ 29k • written 7.5 years ago by ▴ 10
1
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1
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1.4k
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DESeq2 confounding cartridge
deseq2 confounders nanostring rnaseq differential gene expression
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
0
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1
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2.7k
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RUVseq: How to implement to more complex time-course model?
ruvseq deseq2 model.matrix confounders
updated 8.4 years ago by ▴ 980 • written 8.4 years ago by ▴ 10
0
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7
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3.3k
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DESeq2: how to identify confounding variable in the design matrix
deseq2 confounders design matrix rnaseq
8.7 years ago lina.faller ▴ 10
0
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3
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Controlling for confounding variables in bumphunter
minfi bumphunter confounders
updated 8.8 years ago by 68k • written 8.8 years ago by • 0
2
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11
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2.5k
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Adjusting for confounders along with paired testing using edgeR
edgeR paired samples confounders model.matrix
updated 9.5 years ago by ★ 7.9k • written 9.5 years ago by ▴ 30
4
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3
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5.4k
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How to do a confounding variable adjustment without using the treatment information?
deseq2 rnaseq_analysis variancestabilizingtransformation confounders
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 10
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5
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5.5k
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how to design a formula in DEseq2 that control for the effect of putative confounders?
Deseq2 dds confounders
updated 10.0 years ago by 43k • written 10.0 years ago by ▴ 30
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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