Showing : consensus • reset
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861
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blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
2.6 years ago Levi • 0
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1
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2.0k
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WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 4.0 years ago by ★ 3.0k • written 4.0 years ago by ▴ 30
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1
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2.1k
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Consensus sequence from BAM file
consensus BAM
updated 6.2 years ago by 16k • written 6.2 years ago by • 0
1
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2
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1.6k
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DiffBind returns empty consensus peakset
DiffBind consensus
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by • 0
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1
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1.8k
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SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by • 0
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0
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1.5k
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consensus module relationship
wgcna wgcna package consensus
7.3 years ago 2323982403 ▴ 60
0
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4
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2.4k
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consensus analysis and dba.count function
diffbind consensus
9.0 years ago pabla86 • 0
7 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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