Bioconductor Consensus

Showing : consensus • reset

votes

replies

604

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blockwiseconsensusModules WGCNA consensus

20 months ago Levi • 0

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1.6k

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Network consensus sampledBlockwiseModules resampling WGCNA

updated 3.0 years ago by Peter Langfelder ★ 3.0k • written 3.1 years ago by Caleb Bostwick ▴ 30

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1.8k

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consensus BAM

updated 5.2 years ago by Hervé Pagès 16k • written 5.2 years ago by O. William McClung • 0

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1.3k

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DiffBind consensus

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by aviv.de-morgan • 0

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1.6k

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SC3 plot consensus marker heatmap

updated 6.1 years ago by Vladimir Kiselev ▴ 150 • written 6.2 years ago by shaktirielland • 0

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1.3k

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wgcna wgcna package consensus

6.3 years ago 2323982403 ▴ 60

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2.0k

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diffbind consensus

8.0 years ago pabla86 • 0

7 results • Page 1 of 1

Recent ...

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

Votes

A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

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