Bioconductor Consensus

Showing : consensus • reset

votes

replies

789

views

blockwiseconsensusModules WGCNA consensus

2.4 years ago Levi • 0

votes

1.9k

views

Network consensus sampledBlockwiseModules resampling WGCNA

updated 3.8 years ago by Peter Langfelder ★ 3.0k • written 3.8 years ago by Caleb Bostwick ▴ 30

votes

2.0k

views

consensus BAM

updated 6.0 years ago by Hervé Pagès 16k • written 6.0 years ago by O. William McClung • 0

vote

replies

1.5k

views

DiffBind consensus

updated 6.4 years ago by Rory Stark ★ 5.2k • written 6.4 years ago by aviv.de-morgan • 0

votes

1.7k

views

SC3 plot consensus marker heatmap

updated 6.9 years ago by Vladimir Kiselev ▴ 150 • written 6.9 years ago by shaktirielland • 0

votes

replies

1.5k

views

wgcna wgcna package consensus

7.1 years ago 2323982403 ▴ 60

votes

replies

2.3k

views

diffbind consensus

8.8 years ago pabla86 • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k