Showing : contrast matrix • reset
0
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Designating contrasts in diffSpliceDGE to test for nested effects
diffSpliceDGE Contrast matrix edger
updated 8 months ago by 43k • written 8 months ago by • 0
0
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4
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252
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Agilent two-color microarray analysis with limma: 2x3 factorial design
limma microarray contrast matrix 2x3 factorial design differential expression
updated 14 months ago by 43k • written 15 months ago by • 0
5
votes
5
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535
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Design and Contrast Matrix for Linear Model. To Combine or not to Combine?
limma design and contrast matrix design matrix contrast matrix
updated 2.7 years ago by 57k • written 2.7 years ago by ▴ 230
3
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6
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993
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Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix toptable makecontrasts differential gene expression
3.7 years ago stinehedensted • 0
1
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2
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506
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differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix
updated 4.0 years ago by 7.6k • written 4.0 years ago by • 0
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2
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1.3k
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Time-course analysis with limma for >3 time points
limma contrast matrix design matrix multiple time points timecourse
updated 5 weeks ago by • 0 • written 4.0 years ago by ▴ 20
0
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1
reply
599
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Syntax of DESeq2 contrast argument for all pairwise comparisons
deseq2 contrast matrix
updated 4.3 years ago by 33k • written 4.3 years ago by • 0
4
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7
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590
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Design matrix and contrast for RNA knockdown experiment
design matrix limma contrast matrix
updated 4.7 years ago by ★ 26k • written 4.7 years ago by ▴ 140
4
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3
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What is the correct contrast matrix if one treatment must be compared to both of the other two treatments, but separately?
edger limma model.matrix contrast matrix design matrix
updated 4.9 years ago by ▴ 590 • written 4.9 years ago by • 0
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Comment: How does the empirical Bayes moderation (eBayes) in the limma pipeline work? by Junghoon ▴ 10
That was exactly what I was looking for.
Answer: how to plot multiple RLEs on same plot? by James W. MacDonald 57k
Where did that first plot come from? The code used to make that may be available. Anyway, making a plot like that is, in my experience,…
Answer: How does the empirical Bayes moderation (eBayes) in the limma pipeline work? by James W. MacDonald 57k
`?squeezeVar`
Comment: Problem installing packages including flowWorkspace by shepherl 2.7k
On quick glance, it appears you do not have write access to the library directory in order to update the packages? Was R or these package…
Comment: New annotation package - no response from packages@bioconductor.org by athief ▴ 10
Yes, I am registered and have the watched tags updated. I am not sure if I should be awaiting an email answer for further instructions abou…
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Answer: How does the empirical Bayes moderation (eBayes) in the limma pipeline work?
Answer: How does the empirical Bayes moderation (eBayes) in the limma pipeline work?
Answer: Issue with GSVA using dgCMatrix
A: How can I find the location of a gene based on cytogenetic bands (e.g. 7q31.2)?
How can I find the location of a gene based on cytogenetic bands (e.g. 7q31.2)?
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