Showing : contrast matrix • reset
0
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8
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988
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Designating contrasts in diffSpliceDGE to test for nested effects
diffSpliceDGE Contrast matrix edger
updated 3.2 years ago by 49k • written 3.2 years ago by • 0
0
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4
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1.1k
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Agilent two-color microarray analysis with limma: 2x3 factorial design
limma microarray contrast matrix 2x3 factorial design differential expression
updated 3.6 years ago by 49k • written 3.7 years ago by • 0
5
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5
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1.2k
views
Design and Contrast Matrix for Linear Model. To Combine or not to Combine?
limma design and contrast matrix design matrix contrast matrix
updated 5.2 years ago by 64k • written 5.2 years ago by ▴ 270
3
votes
6
replies
2.0k
views
Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix toptable makecontrasts differential gene expression
6.2 years ago stinehedensted • 0
1
vote
2
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1.2k
views
differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix
updated 6.4 years ago by 7.8k • written 6.4 years ago by • 0
0
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2
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2.7k
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Time-course analysis with limma for >3 time points
limma contrast matrix design matrix multiple time points timecourse
updated 2.6 years ago by • 0 • written 6.4 years ago by ▴ 20
0
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1
reply
984
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Syntax of DESeq2 contrast argument for all pairwise comparisons
deseq2 contrast matrix
updated 6.8 years ago by 41k • written 6.8 years ago by • 0
4
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7
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1.0k
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Design matrix and contrast for RNA knockdown experiment
design matrix limma contrast matrix
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 170
4
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3
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1.1k
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What is the correct contrast matrix if one treatment must be compared to both of the other two treatments, but separately?
edger limma model.matrix contrast matrix design matrix
updated 7.4 years ago by ▴ 670 • written 7.4 years ago by • 0
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Answer: rDGIdb package inconsistency with web interface by James W. MacDonald 64k
It doesn't appear to be inconsistent. Here is the [API call result][1]. And the [query on the old version][2]. Although as you may be notin…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by Peter Hickey ▴ 650
Initially posted to https://github.com/MarioniLab/DropletUtils/issues/104
Comment: How to read fcs3.2 files by James W. MacDonald 64k
You need to supply more information than saying you tried things and they didn't work. Show code with error messages.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Looks good then.
Answer: DESeq2 : stat or lfcshrink for GSEA analysis by Michael Love 41k
There have been many threads on this support site on this topic.
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Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
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