Bioconductor Makecontrasts

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designmatrices differentialexpression makeContrasts limma model.matrix

2.6 years ago mohammedtoufiq91 ▴ 10

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makeContrasts edgeR

updated 3.3 years ago by Steve Lianoglou ★ 13k • written 3.3 years ago by HS ▴ 10

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microarray dge matrix makecontrasts limma

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by June. ▴ 10

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diffrential expression limma makeContrasts

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by S.Bamopoulos ▴ 10

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rnaseq edgeR makecontrasts interactions

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by David R ▴ 90

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limma model.matrix makecontrasts

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by enricoferrero ▴ 660

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850

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deseq2 makecontrasts

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by samuel.quentin • 0

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contrast matrix toptable makecontrasts differential gene expression

7.2 years ago stinehedensted • 0

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limma contrast missing data lmfit makecontrasts

updated 7.2 years ago by Gordon Smyth 52k • written 7.3 years ago by wewolski ▴ 10

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limma toptable makecontrasts contrast matrix

updated 7.4 years ago by Ryan C. Thompson ★ 7.9k • written 7.4 years ago by hoe • 0

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rnaseq edger makecontrasts

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by wangzhang1988 • 0

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limma model.matrix makecontrasts

7.8 years ago • updated 7.7 years ago TFony ▴ 10

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limma design matrix makecontrasts multiple comparisons

7.8 years ago annabelle.congras ▴ 10

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edger makecontrasts timecourse

updated 8.1 years ago by Ryan C. Thompson ★ 7.9k • written 8.1 years ago by aec ▴ 90

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edger makecontrasts

8.5 years ago xiaoaozqd • 0

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limma microarray interaction model multiple factor design makeContrasts

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by svlachavas ▴ 840

16 results • Page 1 of 1

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Comment: Open Sesame: in what genes are my differentially methylated probes!! by alyssa-daniel • 0

@zhouwanding I have a question regarding DML analysis. I understand the Est_ output is describing the difference in methylation between the…

Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330