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updated 4.3 years ago by
James W. MacDonald
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written 4.3 years ago by
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Answer: Error installing Seqinfo
by
fabio.marroni
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I am answering my own question.
I found the solution thanks to [this post][1], and I am writing here the very simple procedure:
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Comment: Getting a large intercept with DESeq2
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Thanks James -- Denise you can check the "note on factor levels" in the vignette.
And I'd recommend `plotCounts()` for looking at individu…
Comment: Getting a large intercept with DESeq2
by
James W. MacDonald
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As a trivial example, consider this:
```
> model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4))))
(Intercept) Tre…
Answer: Getting a large intercept with DESeq2
by
James W. MacDonald
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The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
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There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…
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