Showing : conumee • reset
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 9 months ago by 68k • written 9 months ago by • 0
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490
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
9 months ago Adam • 0
0
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3
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964
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Conumee with EPICv2 Segment function
Conu conumee
updated 8 months ago by • 0 • written 17 months ago by • 0
1
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2
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954
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conumee with Infinium MethylationEPIC v2.0
conumee
written 18 months ago by ▴ 10
1
vote
9
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3.9k
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conumee with Infinium MethylationEPIC v2.0
MethylationEPICv2.0 conumee
updated 12 months ago by • 0 • written 2.7 years ago by ▴ 50
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1
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1.1k
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dependance for conumee ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’ package installation fails because shortage of memory
IlluminaHumanMethylationEPICanno.ilm10b2.hg19 conumee
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
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1
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2.2k
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conumee (for EPIC): query intensities not given for all probes
IlluminaHumanMethylationEPICmanifest minfi conumee
updated 4.6 years ago by ▴ 40 • written 4.7 years ago by • 0
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Summary CNV plot with conumee
conumee
4.7 years ago melpag • 0
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0
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1.4k
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how to analyze "Beta-score" and get CNVdata using Comunee
conumee CNV 450K
7.8 years ago bird.of.clockwise • 0
10
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8
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conumee error: query intensities not given for all probes.
conumee
updated 23 months ago by • 0 • written 8.4 years ago by ▴ 30
10 results • Page 1 of 1
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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