Bioconductor Conumee

Showing : conumee • reset

votes

replies

179

views

conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest

updated 17 days ago by James W. MacDonald 68k • written 17 days ago by luca.mangherini • 0

votes

190

views

conumee CopyNumberVariation MethylationArrayData

22 days ago • updated 21 days ago Adam • 0

votes

replies

658

views

Conu conumee

updated 4 days ago by zpingfeng • 0 • written 8 months ago by idatta1 • 0

vote

658

views

conumee

updated 8 months ago by idatta1 • 0 • written 10 months ago by Maximus ▴ 10

vote

replies

3.3k

views

MethylationEPICv2.0 conumee

updated 3 months ago by fraober • 0 • written 2.0 years ago by luca.s ▴ 50

votes

996

views

IlluminaHumanMethylationEPICanno.ilm10b2.hg19 conumee

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by diego.bardiaux • 0

votes

2.0k

views

IlluminaHumanMethylationEPICmanifest minfi conumee

updated 3.9 years ago by volker hovestadt ▴ 40 • written 4.0 years ago by theresa.walder • 0

votes

replies

1.2k

views

conumee

4.0 years ago melpag • 0

votes

replies

1.3k

views

conumee CNV 450K

7.1 years ago bird.of.clockwise • 0

votes

replies

4.7k

views

conumee

updated 14 months ago by Mingkee • 0 • written 7.7 years ago by yura.grabovska ▴ 30

10 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

Awards • All