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2.7k
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ensemblVEP, variant_effect_predictor versions and release schedule
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updated 11.8 years ago by ★ 6.8k • written 11.8 years ago by ▴ 30
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gage and GO analysis
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updated 11.9 years ago by ▴ 570 • written 11.9 years ago by ★ 13k
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CAMERA output to Neutral Monoisotopic Mass
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11.9 years ago Charles Determan Jr ▴ 140
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RleList
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updated 11.9 years ago by ★ 11k • written 11.9 years ago by ▴ 20
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Oryza sativa problem
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updated 11.9 years ago by ▴ 320 • written 11.9 years ago by ★ 13k
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Apply non-Gaussian distribution data to limma
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updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
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Converting single GRanges object as per chromosome GRangeList
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updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 260
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methyAnalysis error
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12.0 years ago Juan Fernández Tajes ▴ 190
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MethyLumiM to MethyLumiSet?
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updated 12.0 years ago by ★ 4.2k • written 12.0 years ago by ▴ 190
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Create a sample file /tab delimited file in QuasR
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12.0 years ago Michael Stadler ▴ 350
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MethyLumiM to MethyLumiSet?
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12.0 years ago Allegra Petti ▴ 120
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Create a sample file /tab delimited file in QuasR
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12.0 years ago Guest User ★ 13k
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Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA Normalization GO Biobase affy convert oligo miRNA Normalization GO Biobase affy
updated 12.0 years ago by ▴ 190 • written 12.0 years ago by 68k
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working with genome-wide phastCons scores
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12.0 years ago Robert Castelo ★ 3.4k
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450k annotation packages compatible version and analysis with blockFinder (minfi)
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updated 12.0 years ago by ★ 6.5k • written 12.1 years ago by ▴ 50
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BStringSet not work with lists of many DNAString elements
BSgenome convert BSgenome BSgenome convert BSgenome
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 360
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multiple annotations with get()?
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updated 12.1 years ago by 21k • written 12.1 years ago by ▴ 230
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Getting GO ids for genenames in plasmodium falciparum
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updated 12.1 years ago by 25k • written 12.1 years ago by ★ 13k
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Bioconductor refLocs2TranscriptLocs function
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12.1 years ago Michael Lawrence ★ 11k
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snpStats/GWASTools conversion
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12.1 years ago Stephanie M. Gogarten ▴ 890
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pathview
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updated 12.1 years ago by ★ 1.6k • written 12.1 years ago by ▴ 70
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ChIPpeakAnno, getAnnotation question
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ChIPpeakAnno, getAnnotation question
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updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ★ 13k
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Bioconductor refLocs2TranscriptLocs function
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12.1 years ago Michael Lawrence ★ 11k
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help with cleanUpdTSeq for PAS analysis
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12.2 years ago Julie Zhu ★ 4.3k
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How to deal with Affymetrix probe that map to multiple genes
GO Clustering probe convert GO Clustering probe convert
12.2 years ago Gundala Viswanath ▴ 230
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Converting Affymetrix (*_at) Mouse Probe ID to HUGO gene symbol
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12.2 years ago Gundala Viswanath ▴ 230
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how to convert ExpressionSet to AffyBatch
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updated 12.2 years ago by 68k • written 12.2 years ago by ★ 2.0k
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Rsubread for paired end SOLID sequencing
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updated 12.2 years ago by ★ 3.6k • written 12.2 years ago by ▴ 50
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makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
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12.2 years ago Sarah Pohl ▴ 30
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cdf redesign
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updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 30
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Error converting SBML to graph Object using R SBML
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Error converting SBML to graph Object using R SBML
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updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ▴ 20
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TranscriptDb object to RangedData for ChIPpeakAnno
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12.3 years ago Alan Smith ▴ 150
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Converting PDict to DNAStringSet?
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12.3 years ago Ryan C. Thompson ★ 7.9k
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convert data in to expression set
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updated 12.4 years ago by ▴ 180 • written 12.4 years ago by ▴ 80
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FeatureExpressionSet using list.files() in place of read.xysfiles()
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updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ▴ 140
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Reading Affy CEL files
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updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ▴ 10
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CIGAR and seq lengths differ after trimming
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updated 12.4 years ago by 25k • written 12.5 years ago by ▴ 300
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ChIPpeakAnno
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12.5 years ago Julie Zhu ★ 4.3k
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minfi: Meth and Unmeth = 0 resulting in beta = NaN?
Normalization convert minfi Normalization convert minfi
updated 12.5 years ago by ★ 6.5k • written 12.5 years ago by ★ 4.1k
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How do I background correct an Illumina eset without using lumiB
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12.5 years ago Gordon Smyth 53k
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How do I background correct an Illumina eset without using lumiB?
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updated 12.5 years ago by ▴ 440 • written 12.5 years ago by ★ 13k
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how to convert genotype snp matrix to nucleotide genotypes?
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updated 12.5 years ago by 6.7k • written 12.5 years ago by ▴ 20
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MethyLumiSet object
convert genoset minfi convert genoset minfi
12.6 years ago Tim Triche ★ 4.2k
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Problem with Limma - Possible Limma/affy bug - minimal code not working
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updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 30
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Bioconductor Digest, Vol 122, Issue 5
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12.6 years ago W. Evan Johnson ▴ 870
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identifying drosophila miRNA targets
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12.6 years ago Fiona ▴ 70
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diffbind
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462 results • Page 2 of 10
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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