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BED2RangedData
GO
convert
GO
convert
updated 12.8 years ago by
R
▴ 40 • written 12.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Help with EdgeR running error
convert
edgeR
convert
edgeR
12.8 years ago
Chia Jing Yi
▴ 10
0
votes
2
replies
1.7k
views
ChIPpeakAnno query
Microarray
Annotation
Cancer
Prostate
annotate
affy
convert
biomaRt
ChIPpeakAnno
Cancer
updated 12.9 years ago by
Luke Selth
▴ 10 • written 12.9 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
737
views
annotationTools: character vector clean-up
convert
convert
12.9 years ago
Guido Hooiveld
★ 4.1k
0
votes
2
replies
990
views
annotationTools: character vector clean-up
convert
convert
updated 12.9 years ago by
Ryan C. Thompson
★ 7.9k • written 12.9 years ago by
Guido Hooiveld
★ 4.1k
0
votes
0
replies
1.7k
views
How can I use the information from an ADF [Array Design File] file for microarray normalization?
Normalization
cdf
PROcess
convert
Normalization
cdf
PROcess
convert
12.9 years ago
Christoph Geisenberger
▴ 10
0
votes
0
replies
1.2k
views
GO to Enzyme Commission number conversion!
GO
convert
GO
convert
12.9 years ago
Guest User
★ 13k
0
votes
0
replies
1.5k
views
HTqPCR
convert
qpcrNorm
ddCt
HTqPCR
ReadqPCR
convert
qpcrNorm
ddCt
HTqPCR
ReadqPCR
12.9 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
.pair to xys files
convert
convert
13.0 years ago
Markus Rienth
▴ 10
0
votes
2
replies
1.5k
views
LogFC query in Limma
Pathways
Cancer
probe
limma
convert
Pathways
Cancer
probe
limma
convert
updated 13.0 years ago by
Gordon Smyth
53k • written 13.0 years ago by
Roopa Subbaiaih
▴ 130
0
votes
6
replies
3.9k
views
LogFC query in Limma
Pathways
convert
Pathways
convert
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Roopa Subbaiaih
▴ 130
0
votes
1
reply
991
views
SNPlocs -> VCF or similar
convert
convert
updated 13.0 years ago by
Hervé Pagès
16k • written 13.0 years ago by
Michael Lawrence
★ 11k
0
votes
5
replies
2.7k
views
rhdf5 and factors
rhdf5
convert
rhdf5
convert
updated 13.0 years ago by
Bernd Fischer
▴ 550 • written 13.0 years ago by
Moritz E. Beber
▴ 10
0
votes
2
replies
1.9k
views
geneid to gene name conversion
VariantAnnotation
convert
biomaRt
VariantAnnotation
VariantAnnotation
convert
biomaRt
updated 13.0 years ago by
Paul Shannon
▴ 750 • written 13.0 years ago by
Matthew Liebers
▴ 10
0
votes
21
replies
8.5k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 2.2 years ago by
Marge
• 0 • written 13.1 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
3.4k
views
[GSVA] Segfault with GSVA
RNASeq
Microarray
Annotation
gcrma
convert
GSVA
RNASeq
Microarray
Annotation
gcrma
GSVA
updated 13.0 years ago by
capricy gao
▴ 230 • written 13.0 years ago by
Robert Castelo
★ 3.4k
0
votes
2
replies
3.5k
views
error with as.numeric when running pvclust
convert
convert
updated 13.2 years ago by
James W. MacDonald
68k • written 13.2 years ago by
Alyaa Mahmoud
▴ 440
0
votes
21
replies
5.0k
views
How to annotate genomic coordinates
convert
convert
13.2 years ago
José Luis Lavín
▴ 280
0
votes
13
replies
3.2k
views
CHARM - The following columns in sampleKey...
convert
charm
convert
charm
updated 13.2 years ago by
Andrew Jaffe
▴ 120 • written 13.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP
affy
convert
SNP
affy
convert
13.3 years ago
Fabrice Tourre
▴ 970
0
votes
3
replies
2.1k
views
Assigning gene symbols to Affymetrix data and averaging probes
Annotation
annotate
affy
limma
convert
Annotation
annotate
affy
limma
convert
updated 13.3 years ago by
James W. MacDonald
68k • written 13.3 years ago by
Hoyles, Lesley
▴ 50
0
votes
1
reply
1.8k
views
Differential expression analysis of CAGE data
Transcription
Annotation
convert
edgeR
DESeq
Transcription
Annotation
convert
edgeR
DESeq
updated 13.4 years ago by
Steve Lianoglou
★ 13k • written 13.4 years ago by
Makis Motakis
▴ 30
0
votes
1
reply
3.1k
views
Integer overflow when summing an 'integer' Rle
Coverage
GO
Cancer
convert
IRanges
Coverage
GO
Cancer
convert
IRanges
updated 13.4 years ago by
delhomme@embl.de
★ 1.2k • written 13.4 years ago by
Valerie Obenchain
★ 6.8k
0
votes
1
reply
2.5k
views
Biostrings DNAMultipleAlignment vs AlignedXStringSet
Alignment
convert
Alignment
convert
updated 13.4 years ago by
Martin Morgan
25k • written 13.4 years ago by
Guest User
★ 13k
0
votes
4
replies
1.6k
views
ChIPpeakAnno
convert
ChIPpeakAnno
convert
ChIPpeakAnno
13.4 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
4.1k
views
How to combine VCF-class and data.frame with annotations
GO
annotate
convert
ggbio
GO
annotate
convert
ggbio
written 13.4 years ago by
Stefan Dentro
▴ 70
0
votes
4
replies
3.0k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI
convert
OLIN
EBImage
BiocInstaller
GUI
convert
OLIN
EBImage
BiocInstaller
13.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.7k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI
convert
EBImage
BiocInstaller
GUI
convert
EBImage
BiocInstaller
updated 13.5 years ago by
Dan Tenenbaum
★ 8.2k • written 13.5 years ago by
Olin Silander
▴ 30
0
votes
2
replies
1.7k
views
flowQ loading issue
convert
flowQ
convert
flowQ
updated 13.6 years ago by
Greg Finak
▴ 240 • written 13.6 years ago by
Fletez-Brant, Christopher NIH/VRC [C]
▴ 60
0
votes
4
replies
1.4k
views
Reading Paired End Native Report Format in ShortRead
convert
convert
updated 13.6 years ago by
Martin Morgan
25k • written 13.6 years ago by
Guest User
★ 13k
0
votes
0
replies
820
views
FW: Reproducibility in DESeq
convert
DESeq
convert
DESeq
13.6 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
945
views
Converting floating point RangedData to Rle
Coverage
convert
rtracklayer
Coverage
convert
rtracklayer
13.6 years ago
Marcin Imielinski
▴ 30
0
votes
0
replies
1.1k
views
reads of different lengths (easyRNASeq)
Annotation
Organism
BSgenome
convert
BSgenome
easyRNASeq
Annotation
Organism
BSgenome
13.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
4
replies
1.9k
views
Printing arrayQualityMetrics report
convert
arrayQualityMetrics
convert
arrayQualityMetrics
updated 13.6 years ago by
Wolfgang Huber
★ 13k • written 13.6 years ago by
David Westergaard
▴ 280
0
votes
0
replies
1.9k
views
Is there an R package to export genotype data to PED /MAP files?
affy
convert
affy
convert
13.6 years ago
Javier Pérez Florido
▴ 840
0
votes
2
replies
2.1k
views
get genomic location
Alignment
convert
Alignment
convert
updated 13.6 years ago by
Valerie Obenchain
★ 6.8k • written 13.6 years ago by
mali salmon
▴ 370
0
votes
0
replies
1.1k
views
output from "getChipInfo" prevents Illumina ProbeID conversion
Annotation
Normalization
convert
lumi
Annotation
Normalization
convert
lumi
13.6 years ago
Pan Du
▴ 440
0
votes
1
reply
4.0k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization
graph
limma
convert
edgeR
DESeq
Rsubread
Normalization
graph
limma
convert
updated 3.1 years ago by
Gordon Smyth
53k • written 13.7 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
4
replies
1.4k
views
frmaTools: error with 'convertPlatform'
cdf
affy
convert
cdf
affy
convert
updated 13.7 years ago by
Matthew McCall
▴ 830 • written 13.7 years ago by
Guido Hooiveld
★ 4.1k
0
votes
1
reply
4.4k
views
samtools error
Cancer
convert
Cancer
convert
updated 13.7 years ago by
Lucia Peixoto
▴ 330 • written 13.7 years ago by
Marcus Davy
▴ 390
0
votes
0
replies
1.4k
views
arrayQualityMetrics error with MAList
Normalization
convert
arrayQualityMetrics
Normalization
convert
arrayQualityMetrics
13.7 years ago
Daniel Aaen Hansen
▴ 90
0
votes
1
reply
3.4k
views
samtools error
convert
convert
updated 13.7 years ago by
Martin Morgan
25k • written 13.7 years ago by
Yu Chuan Tai
▴ 440
0
votes
1
reply
2.0k
views
How to use DESeq output to convert raw counts to normalized data
convert
DESeq
convert
DESeq
updated 13.7 years ago by
Simon Anders
★ 3.8k • written 13.7 years ago by
Xin Davis
▴ 30
0
votes
3
replies
1.7k
views
export a GappedAlignment object to a BAM file
convert
convert
updated 13.7 years ago by
Michael Lawrence
★ 11k • written 13.7 years ago by
Yue Li
▴ 370
0
votes
3
replies
13k
views
Convert gene symbols to ensembl id
convert
convert
updated 13.7 years ago by
Fred Boehm
▴ 20 • written 13.7 years ago by
michelle_low
▴ 50
0
votes
1
reply
1.2k
views
NuIDs not found
Annotation
convert
minfi
Annotation
convert
minfi
updated 13.7 years ago by
Tim Triche
★ 4.2k • written 13.7 years ago by
Ed Siefker
▴ 230
0
votes
0
replies
2.0k
views
Questions: How to convert egt file to txt
convert
convert
13.8 years ago
JiangZhengyu
▴ 40
0
votes
0
replies
1.4k
views
arrayQualityMetrics error with MAList
Normalization
convert
arrayQualityMetrics
Normalization
convert
arrayQualityMetrics
13.8 years ago
Wolfgang Huber
★ 13k
0
votes
10
replies
2.7k
views
How to convert from IRanges(List) to Rle(List)
convert
IRanges
convert
IRanges
updated 13.8 years ago by
Martin Morgan
25k • written 13.8 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
710
views
ChIPpeakAnno: Question about strand conversion in BED2RangedData()
convert
convert
13.8 years ago
Julie Zhu
★ 4.3k
462 results • Page
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Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
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Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
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• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
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by
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53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
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