Showing : convert • reset
0
votes
6
replies
2.2k
views
BED2RangedData
GO convert GO convert
updated 12.8 years ago by ▴ 40 • written 12.8 years ago by ★ 13k
0
votes
0
replies
1.4k
views
Help with EdgeR running error
convert edgeR convert edgeR
12.8 years ago Chia Jing Yi ▴ 10
0
votes
2
replies
1.7k
views
ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.9 years ago by ▴ 10 • written 12.9 years ago by ★ 4.3k
0
votes
0
replies
737
views
annotationTools: character vector clean-up
convert convert
12.9 years ago Guido Hooiveld ★ 4.1k
0
votes
2
replies
990
views
annotationTools: character vector clean-up
convert convert
updated 12.9 years ago by ★ 7.9k • written 12.9 years ago by ★ 4.1k
0
votes
0
replies
1.7k
views
How can I use the information from an ADF [Array Design File] file for microarray normalization?
Normalization cdf PROcess convert Normalization cdf PROcess convert
12.9 years ago Christoph Geisenberger ▴ 10
0
votes
0
replies
1.2k
views
GO to Enzyme Commission number conversion!
GO convert GO convert
12.9 years ago Guest User ★ 13k
0
votes
0
replies
1.5k
views
HTqPCR
convert qpcrNorm ddCt HTqPCR ReadqPCR convert qpcrNorm ddCt HTqPCR ReadqPCR
12.9 years ago Guest User ★ 13k
0
votes
0
replies
1.2k
views
.pair to xys files
convert convert
13.0 years ago Markus Rienth ▴ 10
0
votes
2
replies
1.5k
views
LogFC query in Limma
Pathways Cancer probe limma convert Pathways Cancer probe limma convert
updated 13.0 years ago by 53k • written 13.0 years ago by ▴ 130
0
votes
6
replies
3.9k
views
LogFC query in Limma
Pathways convert Pathways convert
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 130
0
votes
1
reply
991
views
SNPlocs -> VCF or similar
convert convert
updated 13.0 years ago by 16k • written 13.0 years ago by ★ 11k
0
votes
5
replies
2.7k
views
rhdf5 and factors
rhdf5 convert rhdf5 convert
updated 13.0 years ago by ▴ 550 • written 13.0 years ago by ▴ 10
0
votes
2
replies
1.9k
views
geneid to gene name conversion
VariantAnnotation convert biomaRt VariantAnnotation VariantAnnotation convert biomaRt
updated 13.0 years ago by ▴ 750 • written 13.0 years ago by ▴ 10
0
votes
21
replies
8.5k
views
BAM files to Genomic Ranges object
Alignment convert Repitools Alignment convert Repitools
updated 2.2 years ago by • 0 • written 13.1 years ago by ▴ 280
0
votes
3
replies
3.4k
views
[GSVA] Segfault with GSVA
RNASeq Microarray Annotation gcrma convert GSVA RNASeq Microarray Annotation gcrma GSVA
updated 13.0 years ago by ▴ 230 • written 13.0 years ago by ★ 3.4k
0
votes
2
replies
3.5k
views
error with as.numeric when running pvclust
convert convert
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 440
0
votes
21
replies
5.0k
views
How to annotate genomic coordinates
convert convert
13.2 years ago José Luis Lavín ▴ 280
0
votes
13
replies
3.2k
views
CHARM - The following columns in sampleKey...
convert charm convert charm
updated 13.2 years ago by ▴ 120 • written 13.2 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
13.3 years ago Fabrice Tourre ▴ 970
0
votes
3
replies
2.1k
views
Assigning gene symbols to Affymetrix data and averaging probes
Annotation annotate affy limma convert Annotation annotate affy limma convert
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 50
0
votes
1
reply
1.8k
views
Differential expression analysis of CAGE data
Transcription Annotation convert edgeR DESeq Transcription Annotation convert edgeR DESeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 30
0
votes
1
reply
3.1k
views
Integer overflow when summing an 'integer' Rle
Coverage GO Cancer convert IRanges Coverage GO Cancer convert IRanges
updated 13.4 years ago by ★ 1.2k • written 13.4 years ago by ★ 6.8k
0
votes
1
reply
2.5k
views
Biostrings DNAMultipleAlignment vs AlignedXStringSet
Alignment convert Alignment convert
updated 13.4 years ago by 25k • written 13.4 years ago by ★ 13k
0
votes
4
replies
1.6k
views
ChIPpeakAnno
convert ChIPpeakAnno convert ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
4.1k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 13.4 years ago by ▴ 70
0
votes
4
replies
3.0k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
13.5 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
1.7k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 13.5 years ago by ★ 8.2k • written 13.5 years ago by ▴ 30
0
votes
2
replies
1.7k
views
flowQ loading issue
convert flowQ convert flowQ
updated 13.6 years ago by ▴ 240 • written 13.6 years ago by ▴ 60
0
votes
4
replies
1.4k
views
Reading Paired End Native Report Format in ShortRead
convert convert
updated 13.6 years ago by 25k • written 13.6 years ago by ★ 13k
0
votes
0
replies
820
views
FW: Reproducibility in DESeq
convert DESeq convert DESeq
13.6 years ago Fatemehsadat Seyednasrollah ▴ 260
0
votes
0
replies
945
views
Converting floating point RangedData to Rle
Coverage convert rtracklayer Coverage convert rtracklayer
13.6 years ago Marcin Imielinski ▴ 30
0
votes
0
replies
1.1k
views
reads of different lengths (easyRNASeq)
Annotation Organism BSgenome convert BSgenome easyRNASeq Annotation Organism BSgenome
13.6 years ago delhomme@embl.de ★ 1.2k
0
votes
4
replies
1.9k
views
Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 280
0
votes
0
replies
1.9k
views
Is there an R package to export genotype data to PED /MAP files?
affy convert affy convert
13.6 years ago Javier Pérez Florido ▴ 840
0
votes
2
replies
2.1k
views
get genomic location
Alignment convert Alignment convert
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 370
0
votes
0
replies
1.1k
views
output from "getChipInfo" prevents Illumina ProbeID conversion
Annotation Normalization convert lumi Annotation Normalization convert lumi
13.6 years ago Pan Du ▴ 440
0
votes
1
reply
4.0k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert
updated 3.1 years ago by 53k • written 13.7 years ago by ★ 6.5k
0
votes
4
replies
1.4k
views
frmaTools: error with 'convertPlatform'
cdf affy convert cdf affy convert
updated 13.7 years ago by ▴ 830 • written 13.7 years ago by ★ 4.1k
0
votes
1
reply
4.4k
views
samtools error
Cancer convert Cancer convert
updated 13.7 years ago by ▴ 330 • written 13.7 years ago by ▴ 390
0
votes
0
replies
1.4k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
13.7 years ago Daniel Aaen Hansen ▴ 90
0
votes
1
reply
3.4k
views
samtools error
convert convert
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 440
0
votes
1
reply
2.0k
views
How to use DESeq output to convert raw counts to normalized data
convert DESeq convert DESeq
updated 13.7 years ago by ★ 3.8k • written 13.7 years ago by ▴ 30
0
votes
3
replies
1.7k
views
export a GappedAlignment object to a BAM file
convert convert
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ▴ 370
0
votes
3
replies
13k
views
Convert gene symbols to ensembl id
convert convert
updated 13.7 years ago by ▴ 20 • written 13.7 years ago by ▴ 50
0
votes
1
reply
1.2k
views
NuIDs not found
Annotation convert minfi Annotation convert minfi
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 230
0
votes
0
replies
2.0k
views
Questions: How to convert egt file to txt
convert convert
13.8 years ago JiangZhengyu ▴ 40
0
votes
0
replies
1.4k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
13.8 years ago Wolfgang Huber ★ 13k
0
votes
10
replies
2.7k
views
How to convert from IRanges(List) to Rle(List)
convert IRanges convert IRanges
updated 13.8 years ago by 25k • written 13.8 years ago by ★ 1.2k
0
votes
0
replies
710
views
ChIPpeakAnno: Question about strand conversion in BED2RangedData()
convert convert
13.8 years ago Julie Zhu ★ 4.3k
462 results • Page 3 of 10
Recent ...
Replies
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Votes
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
Awards • All
Popular Question to shepherl 4.3k
Popular Question to fl ▴ 20
Voter to SamGG ▴ 360
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to Hervé Pagès 16k
Locations • All
United States, just now
United States, 7 minutes ago
United States, 24 minutes ago
QATAR, 48 minutes ago
India, 48 minutes ago
Traffic: 1726 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6