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cydar
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
thkapell
▴ 10
1
vote
6
replies
1.6k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
ghogg
• 0
0
votes
4
replies
1.1k
views
Using output from normalizeBatch() outside of cydar package
cydar
mass cytometry
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
kenneth.baker
• 0
2
votes
8
replies
1.5k
views
Cydar normalizeBatch specifying batches
Cydar
normalization
normalizeBatch
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Florent
▴ 10
2
votes
4
replies
928
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
mikhael.manurung
▴ 270
1
vote
2
replies
818
views
cydar: negative values for cell assignment indices
cydar
6.8 years ago
Lukas Weber
• 0
6 results • Page
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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