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cytoml
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FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 5 weeks ago by
SamGG
▴ 350 • written 11 weeks ago by
jarod
▴ 30
0
votes
0
replies
509
views
CytoML: gatingset_to_flowjo() "Could not find files for the given pattern(s)" error
CytoML
21 months ago
nmchavez
• 0
0
votes
0
replies
544
views
flowjo_to_gatingset() subset samples issue
CytoML
2.0 years ago
stephenfchristy
• 0
0
votes
0
replies
876
views
[CytoML/ggcyto] y-axis density plot: low cell count numbers
CytoML
ggcyto
cytoml
2.1 years ago
FL
• 0
0
votes
0
replies
659
views
flowjo_to_gatingset function error
CytoML
3.3 years ago
Iman
• 0
0
votes
2
replies
966
views
Add ticks to scale_x_flowjo_biexp()?
R
CytoML
ggycto
updated 3.4 years ago by
Jiang, Mike
★ 1.3k • written 3.4 years ago by
Marissa
• 0
0
votes
2
replies
799
views
cytobank_to_gatingset path too long Error
CytoML
cytobank_to_gatingset
3.7 years ago
km_sch2002
• 0
7 results • Page
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Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result
by
ATpoint
★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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