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Job: Research scientist in bioinformatics, Sweden
bioinformatics data analysis post doc Job
3.6 years ago mauno.vihinen • 0
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
job biostatistics bioinformatics data analysis core facility Job
4.2 years ago Michael Prummer • 0
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
4.2 years ago jmaanaki • 0
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Job: Postdoctoral Research position in the Genomics of Cerebral Palsy (University of Adelaide, Australia)
Cerebral Palsy bioinformatics data analysis Job
6.4 years ago gammyknee ▴ 10
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Where to find open access microbiome data for case-control comparative study?
microbiome data analysis data request
updated 6.5 years ago by 13k • written 6.5 years ago by • 0
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Tutorial for RNA-Seq Data Analysis
rnaseq data analysis tutorial workflows differential gene expression
updated 6.5 years ago by ★ 28k • written 6.5 years ago by • 0
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New to mass spec data analysis
data analysis xcms Tutorial
updated 6.5 years ago by 48k • written 6.5 years ago by • 0
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Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k
Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…
Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Comment: DeSeq2 design fails (full model matrix is less than full rank) by Basti ▴ 720
As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…
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Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
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