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Deseq2 rlog or 'regular' normalization?
Deseq2
rlog transformation
data visualization
8.6 years ago
sunil.mangalam
• 0
4
votes
3
replies
709
views
RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2
RNA-Seq
uniform distribution
data visualization
updated 4.1 years ago by
Steve Lianoglou
★ 13k • written 4.1 years ago by
Ndimensional
▴ 20
0
votes
1
reply
1.9k
views
Pathview: visualization of data
pathview
data visualization
updated 8.2 years ago by
Luo Weijun
★ 1.6k • written 8.2 years ago by
Guido Hooiveld
★ 3.9k
0
votes
1
reply
619
views
DNA Deferential metheylation
data visualization
7.4 years ago
tarek_2050
• 0
1
vote
1
reply
1.9k
views
Using pathview with uncommon species leads to Errors
pathview
Kegg
rnaseq
data visualization
updated 7.8 years ago by
Luo Weijun
★ 1.6k • written 7.8 years ago by
rafre
• 0
0
votes
1
reply
2.5k
views
Input file of NGS data for Pathview
rnaseq
pathview
data visualization
updated 8.5 years ago by
Luo Weijun
★ 1.6k • written 8.5 years ago by
amoltej
▴ 10
0
votes
0
replies
826
views
Visualize FlowSet by Date
FlowSet
data visualization
cellcounts
6.9 years ago
Maria
• 0
1
vote
0
replies
1.1k
views
Job:
Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science
data visualization
machine learning
cancer
Job
6.0 years ago • updated 5.9 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
459
views
how to construct mds plot of differentially expressed genes?
differentially expressed genes
mds plot
data visualization
5.1 years ago
pratikshasharma47
• 0
0
votes
0
replies
1.6k
views
Job:
Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics
bioinformatician job
data visualization
Job
8.5 years ago
Doe, Aimee
▴ 40
10 results • Page
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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