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dba.report
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1.0k
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DiffBind dba.report inconsistent output when using filter parameters
diffbind
dba.report
filtering
6.5 years ago
konstantopoulos
• 0
2
votes
3
replies
797
views
Getting different differentially accessible peaks between versions
dba.report
DiffBind
written 11 months ago by
jandrade
• 0
0
votes
1
reply
600
views
diffbind counts as same values
diffbind
dba.count
dba.report
updated 4.6 years ago by
Rory Stark
★ 5.2k • written 4.6 years ago by
chadnewton
• 0
0
votes
1
reply
769
views
Diffbind - "dba.report" showing values with less significant figures?
diffbind
dba.report
updated 6.8 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
wesley.cai
• 0
0
votes
2
replies
1.1k
views
DiffBind
bflip
dba.report
DiffBind
2.8 years ago • updated 2.7 years ago
Riba Michela
▴ 90
0
votes
0
replies
985
views
removing "_" automatically inserted in dba.report filename
dba.report
DiffBind
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
Silvia
• 0
6 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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