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dese
•
reset
4
votes
5
replies
1.8k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 8 months ago by
ij283
• 0 • written 22 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.1k
views
Merging two plated in R
dese
DESeq2
updated 2.7 years ago by
James W. MacDonald
68k • written 2.7 years ago by
lmrogers34
▴ 10
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
glennli
• 0
2
votes
17
replies
2.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Alina
• 0
2
votes
2
replies
550
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
6 months ago
BioinfGuru
▴ 70
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.0 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
570
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
12 months ago
pl23
• 0
0
votes
2
replies
864
views
Linear Model Fitting and Colinearity
dese
DESeq2
14 months ago
Hugo
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
hpapoli
• 0
0
votes
3
replies
559
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 12 months ago by
Xu
• 0
0
votes
2
replies
800
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.3 years ago by
Michael Love
43k • written 3.3 years ago by
Dinesh
• 0
0
votes
1
reply
388
views
collapseReplicates dimension error
DESeq2
Dese
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Léa
• 0
0
votes
5
replies
4.1k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Maryam.sed1400
• 0
0
votes
2
replies
1.8k
views
Handling NA's in Deseq2
Dese
DESeq2
20 months ago
Asger Mølgaard
• 0
0
votes
5
replies
1.1k
views
DESeq2 analysis
DESe
DESeq2
18 months ago
Adèle
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
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