Showing : dese • reset
2
votes
17
replies
1.7k
views
lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 11 months ago by 41k • written 11 months ago by • 0
0
votes
5
replies
810
views
DESeq2 analysis
DESe DESeq2
9 months ago Adèle • 0
0
votes
5
replies
3.4k
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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 24 months ago by ▴ 780 • written 24 months ago by • 0
4
votes
4
replies
1.1k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 7 weeks ago by • 0 • written 13 months ago by ▴ 10
3
votes
3
replies
931
views
Merging two plated in R
dese DESeq2
updated 23 months ago by 65k • written 23 months ago by ▴ 10
2
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3
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992
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 3.2 years ago by 41k • written 3.2 years ago by • 0
1
vote
3
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1.4k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
2.3 years ago aedavids ▴ 20
0
votes
2
replies
255
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
updated 11 weeks ago by ★ 4.1k • written 11 weeks ago by • 0
0
votes
2
replies
627
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 2.6 years ago by 41k • written 2.6 years ago by • 0
0
votes
2
replies
959
views
Handling NA's in Deseq2
Dese DESeq2
11 months ago Asger Mølgaard • 0
0
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2
replies
856
views
DESeq2 ratio of ratios and p-value
DESeq2 dese
2.5 years ago wilfried.guiblet • 0
0
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2
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260
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Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
3 months ago pl23 • 0
0
votes
2
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767
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Effect of within-group variation on gene expression analysis
DESeq2
updated 3.4 years ago by 41k • written 3.4 years ago by • 0
0
votes
2
replies
404
views
Linear Model Fitting and Colinearity
dese DESeq2
4 months ago Hugo • 0
0
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1
reply
169
views
collapseReplicates dimension error
DESeq2 Dese
updated 5 weeks ago by 41k • written 6 weeks ago by • 0
15 results • Page 1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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