Bioconductor Deseq

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deseq deseq2

updated 9 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 9 months ago by Michael Love 42k • written 9 months ago by Ndimensional ▴ 20

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909

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DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Abir.khazaal ▴ 10

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526

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deseq DESeq2

5 months ago georgii.vdovin • 0

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deseq DESeq2

updated 4 months ago by ATpoint ★ 4.1k • written 4 months ago by Hugo • 0

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322

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DESeq2 deseq

10 weeks ago Meme • 0

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Z-score RNASeqData Deseq DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by khaserdene99 • 0

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385

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Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

8 results • Page 1 of 1

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Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Ask yourself the question how a gene that is exactly the same everywhere adds anything to any analysis. Heatmaps usually take DEGs to infer…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

I'd argue that most users, especially the general reader of a paper is interested in a visual representation of the data **and** applied cu…

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

I'd also add that plotting adjusted P-values in the y-axis of the volcano plot is not the recommended way to produce a volcano plot. This h…

Comment: Cannot connect to ExperimentHub server by Jiayu • 0

Many thanks and it also resolved the same issue for me!

Votes

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Answer: Cannot connect to ExperimentHub server

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

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Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10