Bioconductor Deseq

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DESeq2 deseq

12 weeks ago Meme • 0

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deseq DESeq2

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by Hugo • 0

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deseq DESeq2

6 months ago georgii.vdovin • 0

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Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

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Z-score RNASeqData Deseq DESeq2

updated 8 months ago by James W. MacDonald 66k • written 8 months ago by khaserdene99 • 0

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DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Abir.khazaal ▴ 10

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 10 months ago by Michael Love 42k • written 10 months ago by Ndimensional ▴ 20

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deseq deseq2

updated 9 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

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Comment: BayesSpace parameters for DLPFC Visium data by Newt • 0

Hola guys. I recently read a review of EssayTyper on [https://nocramming.com/essaytyper-review][1] and was impressed by its depth and objec…

Comment: Visium RNA by Newt • 0

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

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how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Popular Question to mohammedtoufiq91 ▴ 10