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deseq2
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Slightly different count plots from R and spreadsheet
DESeq2
ggplot2
23 hours ago • updated 15 hours ago
boczniak767
▴ 720
1
vote
3
replies
135
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LRT, more than two conditions and pairwise comparisons
DESeq2
updated 2 days ago by
James W. MacDonald
66k • written 3 days ago by
boczniak767
▴ 720
2
votes
4
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214
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DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
updated 2 days ago by
Michael Love
42k • written 5 days ago by
shaunpeterson
• 0
0
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6
replies
594
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
6 days ago • updated 2 days ago
Ken C
• 0
1
vote
2
replies
269
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
9 days ago • updated 6 days ago
BioinfGuru
▴ 30
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Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
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shepherl
3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Answer: unable to access bioconductor packages - qvalue installation failed...
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shepherl
3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Comment: Get gene symbols for a set of hg19 coordinates
by
pcantalupo
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Now why didn't I think of that? I had tunnel vision thinking I needed to use an annotation package. Thank you ATpoint!
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
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Konstantin
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It works with "Germany (Gottingen)"! Thanks!
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
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mgdrnl
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I solved the problem installing the latest R version (4.4.0)
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Comment: miRTarRnaseq library
Answer: Get gene symbols for a set of hg19 coordinates
Answer: Get gene symbols for a set of hg19 coordinates
Comment: recount3 problem downloading data from source sra
Not able to install any Bioconductor 3.18 package [unable to access index]
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