Bioconductor Design formula

Showing : design formula • reset

votes

replies

7.0k

views

deseq2 design formula log fold change

updated 5 months ago by Michael Love 43k • written 4.5 years ago by jason.taotaotan ▴ 40

votes

replies

899

views

deseq2 design formula

updated 5.0 years ago by swbarnes2 ★ 1.4k • written 5.0 years ago by tracecakes • 0

vote

replies

1.1k

views

deseq2 rnaseq repeated measures time series design formula

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by Dorien ▴ 10

votes

replies

1.3k

views

deseq2 design design formula time course lrt

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by ac_bioinformatics • 0

votes

replies

950

views

deseq2 design formula design matrix edgeR ATAC

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by corinne_hutfilz • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k