Bioconductor DesignMatrix

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1.2k

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R designmatrix edgeR limma model.matrix

17 months ago Abdul ▴ 20

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1.1k

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DESeq2 designmatrix edgeR limma tidybulk

updated 16 months ago by Michael Love 42k • written 16 months ago by aditya.m ▴ 10

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1.3k

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limma microarray designmatrix

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by nashchem • 0

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1.2k

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Limma designMatrix

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Keifa ▴ 10

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959

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MutlipleFactors DesignMatrix edgeR

3.3 years ago Debayan ▴ 20

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1.4k

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.6 years ago by Gordon Smyth 50k • written 2.6 years ago by rebecca.lea.johnston • 0

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634

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designmatrix DifferentialExpression edgeR RNAseq

3.3 years ago nageshprabhu.k ▴ 10

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1.1k

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designmatrix RNA-seq limma

updated 3.2 years ago by Gordon Smyth 50k • written 3.2 years ago by athief ▴ 20

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864

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edger r differentialanalysis rnaseq designmatrix

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by Beginner ▴ 60

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699

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deseq2 miRNASeq designmatrix Batch

updated 4.2 years ago by Michael Love 42k • written 4.2 years ago by anshulmbi • 0

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229

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subsettingdata edgeR designmatrix

updated 5 weeks ago by Gordon Smyth 50k • written 5 weeks ago by prity6459 • 0

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1.1k

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designmatrix deseq2 DESeq2

updated 2.6 years ago by swbarnes2 ★ 1.4k • written 2.6 years ago by OST • 0

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929

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edgeR pairedsamples designmatrix

3.3 years ago sfidemw • 0

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195

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limma designmatrix

updated 7 weeks ago by Gordon Smyth 50k • written 7 weeks ago by avery • 0

14 results • Page 1 of 1

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Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k

Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

Answer: ChAMP not available for bioconductor 3.19 by shepherl 3.9k

See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …

Votes

A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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