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Showing :
designMatrix
•
reset
4
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6
replies
1.2k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
17 months ago
Abdul
▴ 20
2
votes
6
replies
1.1k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Keifa
▴ 10
3
votes
5
replies
1.0k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 15 months ago by
Michael Love
42k • written 15 months ago by
aditya.m
▴ 10
2
votes
4
replies
1.3k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
nashchem
• 0
2
votes
4
replies
943
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
3.2 years ago
Debayan
▴ 20
2
votes
4
replies
1.4k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 2.5 years ago by
Gordon Smyth
50k • written 2.6 years ago by
rebecca.lea.johnston
• 0
0
votes
3
replies
193
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 18 days ago by
Gordon Smyth
50k • written 19 days ago by
prity6459
• 0
0
votes
3
replies
1.1k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 2.5 years ago by
swbarnes2
★ 1.3k • written 2.5 years ago by
OST
• 0
0
votes
2
replies
900
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
3.2 years ago
sfidemw
• 0
1
vote
2
replies
1.1k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
athief
▴ 20
0
votes
2
replies
851
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Beginner
▴ 60
0
votes
2
replies
687
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
anshulmbi
• 0
0
votes
1
reply
171
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 4 weeks ago by
Gordon Smyth
50k • written 4 weeks ago by
avery
• 0
1
vote
0
replies
625
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
3.2 years ago
nageshprabhu.k
▴ 10
14 results • Page
1 of 1
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Replies
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
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James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
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