Bioconductor Designmatrix

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.5 years ago by Gordon Smyth 50k • written 2.6 years ago by rebecca.lea.johnston • 0

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1.3k

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limma microarray designmatrix

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by nashchem • 0

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1.2k

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R designmatrix edgeR limma model.matrix

17 months ago Abdul ▴ 20

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1.1k

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Limma designMatrix

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Keifa ▴ 10

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1.1k

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designmatrix deseq2 DESeq2

updated 2.5 years ago by swbarnes2 ★ 1.3k • written 2.5 years ago by OST • 0

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designmatrix RNA-seq limma

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by athief ▴ 20

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DESeq2 designmatrix edgeR limma tidybulk

updated 15 months ago by Michael Love 41k • written 15 months ago by aditya.m ▴ 10

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942

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MutlipleFactors DesignMatrix edgeR

3.2 years ago Debayan ▴ 20

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898

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edgeR pairedsamples designmatrix

3.2 years ago sfidemw • 0

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850

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edger r differentialanalysis rnaseq designmatrix

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by Beginner ▴ 60

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687

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deseq2 miRNASeq designmatrix Batch

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by anshulmbi • 0

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624

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designmatrix DifferentialExpression edgeR RNAseq

3.2 years ago nageshprabhu.k ▴ 10

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191

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subsettingdata edgeR designmatrix

updated 16 days ago by Gordon Smyth 50k • written 17 days ago by prity6459 • 0

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166

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limma designmatrix

updated 29 days ago by Gordon Smyth 50k • written 4 weeks ago by avery • 0

14 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k