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Showing :
designmatrix
•
reset
4
votes
6
replies
1.2k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
17 months ago
Abdul
▴ 20
3
votes
5
replies
1.0k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 15 months ago by
Michael Love
41k • written 15 months ago by
aditya.m
▴ 10
2
votes
4
replies
1.3k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
nashchem
• 0
2
votes
6
replies
1.1k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Keifa
▴ 10
2
votes
4
replies
942
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
3.2 years ago
Debayan
▴ 20
2
votes
4
replies
1.4k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 2.5 years ago by
Gordon Smyth
50k • written 2.6 years ago by
rebecca.lea.johnston
• 0
1
vote
0
replies
624
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
3.2 years ago
nageshprabhu.k
▴ 10
1
vote
2
replies
1.1k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 3.1 years ago by
Gordon Smyth
50k • written 3.1 years ago by
athief
▴ 20
0
votes
2
replies
850
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Beginner
▴ 60
0
votes
2
replies
687
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
anshulmbi
• 0
0
votes
3
replies
191
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 16 days ago by
Gordon Smyth
50k • written 17 days ago by
prity6459
• 0
0
votes
3
replies
1.1k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 2.5 years ago by
swbarnes2
★ 1.3k • written 2.5 years ago by
OST
• 0
0
votes
2
replies
898
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
3.2 years ago
sfidemw
• 0
0
votes
1
reply
167
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 29 days ago by
Gordon Smyth
50k • written 4 weeks ago by
avery
• 0
14 results • Page
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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