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shepherl
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
ATpoint
★
5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
•
0
Still happening
using pre-existing size factors
estimating dispersions
gene-wise dispersion estimates: 15 workers
mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
•
0
Still happening in a clean install
Comment: limpa analysis advice
by
Gordon Smyth
53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral.
I don't see any major problems with your data and I think …
Comment: limpa analysis advice
by
SamGG
▴
360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
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