Bioconductor Dexseq

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1.8k

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DESeq2 glmGamPoi DEXSeq

updated 10 months ago by alexandresegers ▴ 20 • written 19 months ago by jeremymsimon ▴ 20

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881

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DEXSeq exon_definition exon

updated 10 months ago by Alejandro Reyes ★ 1.9k • written 10 months ago by zhangpeng1202 • 0

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807

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DEXSeq biomaRt

updated 9 months ago by Hervé Pagès 16k • written 9 months ago by anavmar1 • 0

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688

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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582

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DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

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442

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DEXSeq

3 months ago • updated 11 weeks ago thomas.heigl.ibk • 0

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412

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DEXSeq DRIMSeq DEXSeqDataSet columnduplication

6 months ago NiKo ▴ 10

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408

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DEXSeq

11 months ago vipul14 • 0

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397

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isofor DEXSeq DifferentialSplicing

11 months ago nick_brittain55 • 0

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392

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DEXSeq stageR

6 months ago jbono ▴ 10

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187

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DEXSeq

updated 17 days ago by Alejandro Reyes ★ 1.9k • written 29 days ago by Alessia • 0

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165

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DEXSeq

updated 29 days ago by Alejandro Reyes ★ 1.9k • written 4 weeks ago by Clyde • 0

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147

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DEXSeq

updated 11 days ago by Michael Love 42k • written 11 days ago by Sara • 0

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142

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DEXSeq DEXSeqNAvalues DEXseq

9 weeks ago jean-christophe.helbling • 0

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124

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 29 days ago by Michael Love 42k • written 29 days ago by 09191919 • 0

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DEXSeq SGSeq

23 days ago • updated 18 days ago Sara • 0

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DEXSeq

updated 2 days ago by Alejandro Reyes ★ 1.9k • written 4 days ago by Sara • 0

17 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180