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distanceToNearest
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distanceToNearest
rtracklayer
ranges
distanceToNearest
3 months ago
robjohn70000
• 0
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SOLVED. finding distance to nearest neighbour (non-self) within a list in GenomicRanges
GenomicRanges
GenomicFeatures
grange
distanceToNearest
R
4.5 years ago
rmash
▴ 20
0
votes
1
reply
1.1k
views
GenomicRanges distanceToNearest: trouble replicating snp-gene mapping from older version
GenomicRanges
distancetonearest
strandedness
updated 6.1 years ago by
Valerie Obenchain
★ 6.8k • written 6.1 years ago by
shraddha.pai
• 0
2
votes
5
replies
1.2k
views
DistanceToNearest Not giving nearest Range
GRanges
distancetonearest
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
chitsazanalex
▴ 10
0
votes
5
replies
4.5k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich
granges
distancetonearest
function
dataframe
6.5 years ago
rbronste
▴ 60
1
vote
14
replies
1.9k
views
DistanceToNearest() error: 'nLnode' and 'nRnode' must be single integers
genomicranges
DistanceToNearest
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
roladali
▴ 20
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Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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