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dmpFinder
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2
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5
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618
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dmpFinder for other objects
methylset
minfi
dmpFinder
betaHMM
beta
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
neyousha
• 0
0
votes
0
replies
985
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi
limma
lmm
lmfit
dmpFinder
3.7 years ago
kyleyxw
• 0
0
votes
7
replies
3.6k
views
Is anyone able to explain the statistics behind the dmpFinder function in minfi package?
minfi
methylation
dmpfinder
limma
updated 7.8 years ago by
vulegom
• 0 • written 8.4 years ago by
mcall
▴ 20
1
vote
7
replies
3.3k
views
dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
Biologist
▴ 120
0
votes
2
replies
2.2k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 10.4 years ago by
James W. MacDonald
68k • written 10.4 years ago by
michael.zulyniak
• 0
5 results • Page
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svlachavas
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Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…
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Gordon Smyth
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Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
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Ivo
• 0
You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
Answer: Plot title for PCA in DESeq2
by
ATpoint
★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
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by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
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Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: Plot title for PCA in DESeq2
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