Bioconductor Epic microarray

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champ epic microarray normalization minfi

6.7 years ago Laura • 0

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minfi epic microarray bioconductor

updated 2.5 years ago by Lucy • 0 • written 6.9 years ago by c.sae-lee2 • 0

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2.3k

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bioconductor methylation epic microarray champ

7.0 years ago csappleby-mallinder1 • 0

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1.9k

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methylation epic microarray minfi methylationepic

7.9 years ago nhejazi • 0

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1.2k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.9 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

8.4 years ago rasii • 0

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3.3k

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.6 years ago by James W. MacDonald 67k • written 8.6 years ago by Biologist ▴ 120

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1.8k

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minfi methylation EPIC microarray illumina

updated 8.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.8 years ago by rasii • 0

8 results • Page 1 of 1

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750