Showing : epic microarray • reset
0
votes
1
reply
741
views
ChAMP functional normalization error "subscript out of bounds"
champ epic microarray normalization minfi
3.7 years ago Laura • 0
0
votes
1
reply
446
views
Error in read.metharray.exp
minfi epic microarray bioconductor
updated 11 weeks ago by • 0 • written 3.8 years ago by • 0
0
votes
2
replies
1.1k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor methylation epic microarray champ
4.0 years ago csappleby-mallinder1 • 0
0
votes
4
replies
963
views
minfi "mapToGenome" dimension error
methylation epic microarray minfi methylationepic
4.9 years ago nhejazi • 0
0
votes
0
replies
599
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl minfi epic microarray methylationepic qualitycontrol
4.9 years ago chelsey.ju • 0
0
votes
0
replies
890
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
5.4 years ago rasii • 0
1
vote
7
replies
1.9k
views
dmpFinder return value (minfi)
minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray
updated 5.5 years ago by 58k • written 5.6 years ago by ▴ 90
0
votes
1
reply
1.0k
views
Error in Matrix
minfi methylation EPIC microarray illumina
updated 5.7 years ago by 6.5k • written 5.8 years ago by • 0
8 results • Page 1 of 1
Recent ...
Replies
Answer: airway package not compatible with R version 4.1.2 (2021-11-01) by ATpoint ▴ 970
`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.
Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by Lluís Revilla Sancho ▴ 660
I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k
This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by argonvibio • 0
Hello Michael, and thank you for your reply. I have done as you described, estimating size factors with controlGenes before DESeq, but the…
Answer: DiffBind issue: zero values for all peaks in one chromosome by Rory Stark ★ 4.3k
Losing the reads for one tissue on one chromosome doesn't sound too good! I notice that you are using `DiffBind_3.0`, which is out of da…
Votes
Emirical Bayesian shrinkage for dispertion/LFC estimation
C: Emirical Bayesian shrinkage for dispertion/LFC estimation
A: Emirical Bayesian shrinkage for dispertion/LFC estimation
Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
Comment: universalmotif, question about enrich_motifs function and number of hits returne
Awards • All
Popular Question to floriandeckert ▴ 30
Popular Question to mikhael.manurung ▴ 230
Scholar to Gordon Smyth 44k
Popular Question to Stephanie M. Gogarten ▴ 820
Teacher to Aaron Lun ★ 27k
Locations • All
CRUK, Cambridge, UK, just now
India, 1 minute ago
United States, 13 minutes ago
Portugal, 19 minutes ago
Switzerland, 37 minutes ago
Traffic: 383 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6