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epic microarray
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1.4k
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ChAMP functional normalization error "subscript out of bounds"
champ
epic microarray
normalization
minfi
6.2 years ago
Laura
• 0
0
votes
2
replies
1.3k
views
Error in read.metharray.exp
minfi
epic microarray
bioconductor
updated 2.0 years ago by
Lucy
• 0 • written 6.4 years ago by
c.sae-lee2
• 0
0
votes
2
replies
2.1k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor
methylation
epic microarray
champ
6.5 years ago
csappleby-mallinder1
• 0
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.4 years ago
nhejazi
• 0
0
votes
0
replies
1.1k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.4 years ago
chelsey.ju
• 0
0
votes
0
replies
1.6k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads
methylation
illumina
epic microarray
7.9 years ago
rasii
• 0
1
vote
7
replies
3.0k
views
dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 8.1 years ago by
James W. MacDonald
66k • written 8.1 years ago by
Biologist
▴ 120
0
votes
1
reply
1.6k
views
Error in Matrix
minfi
methylation
EPIC microarray
illumina
updated 8.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.3 years ago by
rasii
• 0
8 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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