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epic microarray
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0
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924
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ChAMP functional normalization error "subscript out of bounds"
champ
epic microarray
normalization
minfi
4.7 years ago
Laura
• 0
0
votes
2
replies
751
views
Error in read.metharray.exp
minfi
epic microarray
bioconductor
updated 6 months ago by
Lucy
• 0 • written 4.9 years ago by
c.sae-lee2
• 0
0
votes
2
replies
1.4k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor
methylation
epic microarray
champ
5.1 years ago
csappleby-mallinder1
• 0
0
votes
4
replies
1.2k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
5.9 years ago
nhejazi
• 0
0
votes
0
replies
752
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
6.0 years ago
chelsey.ju
• 0
0
votes
0
replies
1.1k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads
methylation
illumina
epic microarray
6.4 years ago
rasii
• 0
1
vote
7
replies
2.2k
views
dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 6.6 years ago by
James W. MacDonald
62k • written 6.6 years ago by
Biologist
▴ 110
0
votes
1
reply
1.2k
views
Error in Matrix
minfi
methylation
EPIC microarray
illumina
updated 6.8 years ago by
Kasper Daniel Hansen
6.5k • written 6.8 years ago by
rasii
• 0
8 results • Page
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Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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