Showing : dyndoc • reset
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1.7k
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ReadAffy widget fails for Annotated DataFrame
Microarray DynDoc tkWidgets affy widgetTools Microarray DynDoc tkWidgets affy widgetTools
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 140
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6
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4.1k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 18.3 years ago by ▴ 220 • written 18.3 years ago by ★ 2.2k
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2.2k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
18.3 years ago Min Wook Kim ▴ 20
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8
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4.1k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ▴ 100
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1.4k
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
18.7 years ago Paquet, Agnes ▴ 500
0
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1
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1.5k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 300
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3
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1.8k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 80
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1
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1.2k
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 890
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0
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1.3k
views
batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
21.0 years ago Marion Hakanson ▴ 50
0
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1
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2.1k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 21.1 years ago by ★ 5.5k • written 21.1 years ago by ▴ 100
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0
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1.4k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.2 years ago rgentleman ★ 5.5k
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1.5k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.2 years ago Goeman, J.J. MSTAT ▴ 150
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1
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1.4k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.3 years ago Matthew Hannah ▴ 940
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0
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1.4k
views
Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.3 years ago Matthew Hannah ▴ 940
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0
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1.5k
views
affy packages on Linux doesn't get installed
DynDoc tkWidgets affy affyPLM DynDoc tkWidgets affy affyPLM
22.1 years ago juliab@stat.berkeley.edu ▴ 10
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3
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1.7k
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Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
22.7 years ago madman@jimmy.harvard.edu ▴ 850
16 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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