Showing : edge • reset
1
vote
7
replies
1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.2 years ago joe.d.moore.ii • 0
0
votes
2
replies
1.3k
views
edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 8.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
2
replies
1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 17 months ago by 50k • written 17 months ago by • 0
0
votes
2
replies
619
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
2
replies
862
views
Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 4.5 years ago by 50k • written 4.5 years ago by • 0
3
votes
2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 20
1
vote
1
reply
644
views
export the significant results from EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
618
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.1 years ago emily • 0
0
votes
0
replies
596
views
Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
760
views
Fold Change Calculation in edge package
edge microarray limma affy
4.9 years ago soumyab.g ▴ 10
0
votes
0
replies
858
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
5.7 years ago rubi ▴ 110
0
votes
0
replies
601
views
static experiment in EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
12 results • Page 1 of 1
Recent ...
Replies
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma by James W. MacDonald 65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Votes
Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Awards • All
Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
Centurion to Chris • 0
Commentator to Leonard Goldstein ▴ 200
Popular Question to Matthew Ritchie ▴ 1000
Locations • All
United States, just now
Jerusalem, 3 minutes ago
United States, 5 minutes ago
UPF, Barcelona, Spain, 26 minutes ago
United States, 26 minutes ago
Traffic: 576 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6