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Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
updated 8 hours ago by 66k • written 9 hours ago by ▴ 10
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How to correctly adjust for gender in edgeR
design glm edgeR
updated 6 days ago by 50k • written 6 days ago by • 0
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Citation for edgeR user guide
edgeR
written 28 days ago by ▴ 30
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How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression TimeCourse timeOmics edgeR RNAseq
updated 6 days ago by 50k • written 8 days ago by • 0
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Log-cpm values from limma
limma edgeR RNASeq
updated 11 days ago by 50k • written 4 weeks ago by • 0
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
19 days ago • updated 15 days ago gene_bioconductor ▴ 10
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NEED FOR NESSASORY HELP
RNASeqData edgeR
updated 18 days ago by 50k • written 19 days ago by • 0
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FilterByExpr low counts with small sample size
edgeR
4 weeks ago • updated 29 days ago Jonathan ▴ 10
8 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Thank you so much!
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
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Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
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