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652

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annotation software error ENCODE

updated 6.0 years ago by shepherl 4.2k • written 6.0 years ago by zhiyue.zhao • 0

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1.7k

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annotationhub bugs encode bed

8.9 years ago wcstcyx ▴ 30

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2.1k

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r chipseq encode peak

8.9 years ago Jurat Shahidin ▴ 80

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1.9k

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annotationhub encode

updated 9.6 years ago by Valerie Obenchain ★ 6.8k • written 9.6 years ago by Peter Hickey ▴ 760

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3.2k

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chiPseeker covplot ENCODE ChIpseq

10.5 years ago sarabusquets88 • 0

5 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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