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685

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annotation software error ENCODE

updated 6.2 years ago by shepherl 4.3k • written 6.2 years ago by zhiyue.zhao • 0

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1.8k

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annotationhub bugs encode bed

9.1 years ago wcstcyx ▴ 30

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2.1k

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r chipseq encode peak

9.1 years ago Jurat Shahidin ▴ 80

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1.9k

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annotationhub encode

updated 9.8 years ago by Valerie Obenchain ★ 6.8k • written 9.8 years ago by Peter Hickey ▴ 760

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3.3k

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chiPseeker covplot ENCODE ChIpseq

10.7 years ago sarabusquets88 • 0

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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

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Answer: Incosistencies in buildSNNGraph() function

Answer: Where do the filename come from in the LOLA datasets?

Bioconductor Maintainer Application

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

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Popular Question to Lluís Revilla Sancho ▴ 760