Bioconductor EnrichKEGG

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enrichKEGG KEGGgraph KEGG

updated 8 months ago by Guido Hooiveld ★ 4.1k • written 8 months ago by cinzia.spagnoli • 0

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KEGG enrichKEGG R entrezid

19 months ago Laia ▴ 10

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clusterProfiler enrichKEGG

updated 2.6 years ago by Guido Hooiveld ★ 4.1k • written 2.6 years ago by blim4 • 0

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clusterProfiler enrichKEGG cnetplot

2.9 years ago fatimaruizdelabastida ▴ 10

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enrichplot clusterProfiler enrichKEGG gseKEGG

5.7 years ago yurigorelik ▴ 10

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893

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enrichKEGG GeneRatio

5.7 years ago zhang.jianhai ▴ 10

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1.8k

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kegg enrichkegg clusterprofiler

updated 11 months ago by EvaLan • 0 • written 6.3 years ago by bekah ▴ 40

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clusterprofiler kaas enrichKEGG

updated 7.3 years ago by renuka.nayak • 0 • written 8.2 years ago by googneed • 0

8 results • Page 1 of 1

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

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A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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