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ensembl biomaRt R

updated 4 months ago by SE ▴ 10 • written 10 months ago by kieran.short ▴ 30

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 5 months ago by Johannes Rainer ★ 2.0k • written 4.3 years ago by Guido Hooiveld ★ 3.6k

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biomart R ensembl

updated 4 weeks ago by Kevin Blighe 3.8k • written 2.7 years ago by rykerklie7 • 0

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681

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ensembl R

11 months ago ksci ▴ 10

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454

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Ensembl Rsubread

updated 11 months ago by Gordon Smyth 47k • written 11 months ago by agustin.gonvi ▴ 10

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383

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biomaRt ensembldb ensembl

4 months ago • updated 9 weeks ago jamie.gearing ▴ 60

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ensembl biomaRt ensembldb

11 months ago Benjamin ▴ 20

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285

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biomaRt ensembldb ensembl

written 5 months ago by Louisse ▴ 10

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259

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Ensembl biomaRt

7 months ago Hector • 0

9 results • Page 1 of 1

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Comment: How to extract proteins from PCs in plot_pca in DEP package by Basti ▴ 700

Which information do you want precisely ? plot_pca is just a wrapper for PCA visualization, but it applies prcomp to perform PCA : https://…

Comment: [limma::kegga] Pathway names all NA by Gordon Smyth 47k

The reason why installing limma didn't solve the problem was because you were using Bioconductor 3.15 rather than the current release, whic…

Comment: [limma::kegga] Pathway names all NA by andrewsm • 0

Thank you Gordon for the quick response. I saw something along those lines in the NEWS notes so did try ```{r} BiocManager:install("limma"…

Comment: Time-course, comparison of two groups by Gordon Smyth 47k

With 4 time points there are 3 df between time points, so your spline analysis with `df=3` is exactly the same as if you had treated time a…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

Hi Rory, I am normalizing the counts with the following options: `normalized <- dba.normalize(counts, method=DBA_DESEQ2, normalize = DBA_N…

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Comment: Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Awards • All

Popular Question to Guido Hooiveld ★ 3.6k

Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k