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ensemblbiomart
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6
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biomart R code cannot retrieve gene symbol
biomart
ensemblbiomart
ensemble mart
6.1 years ago
emmak
▴ 20
1
vote
0
replies
1.2k
views
News:
Ensembl 89 has been released
ensembl
biomart
ensemblbiomart
ensembl89
News
6.9 years ago
Thomas Maurel
▴ 800
0
votes
3
replies
3.1k
views
Biomart ensembl annotation does not completely match my gene names
biomart
ensemblbiomart
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
spr
▴ 10
0
votes
2
replies
1.1k
views
Difference between biomart R and biomart website GO query
biomart
ensemblbiomart
go
getbm
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
daniel.gaffney
▴ 20
0
votes
1
reply
1.3k
views
biomaRt getSequence: transcript_exon_intron versus gene_exon_intron?
biomart
ensemblbiomart
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
Katherine Huang
• 0
5 results • Page
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Comment: limma-voom: Calculate the log-fold change in gene expression within a sample
by
xofer16091
• 0
A few more names for [dino game][1] are Dino Dun, Chrome Dino, T-Rex, Google, and No Internet games. You can play the online game on a tabl…
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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