Bioconductor Epivizr

Showing : epivizr • reset

votes

1.4k

views

visualization epivizr

8.3 years ago • updated 8.2 years ago Hector Corrada Bravo ▴ 60

votes

replies

1.3k

views

Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi

11.2 years ago Martin Morgan 25k

votes

replies

1.2k

views

epivizr visualization

9.8 years ago Hector Corrada Bravo ▴ 60

votes

1.1k

views

epivizr epivizr

updated 10.3 years ago by Hector Corrada Bravo ▴ 60 • written 10.3 years ago by Julian Gehring ★ 1.3k

votes

1.0k

views

epivizr

updated 8.3 years ago by Hector Corrada Bravo ▴ 60 • written 8.3 years ago by ashley.doane ▴ 20

votes

replies

921

views

epivizr metavizr

7.3 years ago Hector Corrada Bravo ▴ 60

6 results • Page 1 of 1

Recent ...

Replies

Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k

What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…

Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k

This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…

Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k

DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…

Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k

Sorry - I requested this to be posted here, I will answer.

Answer: tximport data import by Michael Love 42k

Reminder that tximeta exists -- if you are working with mouse or human data and using Ensembl or GENCODE (or RefSeq, but not "latest" which…

Votes

Answer: Should tSNE from biol. replicates look alike?

Comment: fgsea stuck in an infinite loop in the middle of the run

Answer: Empty Results from champ.DMP Despite Expected Output

Answer: How to use compareCluster in ClusterProfiler?

Awards • All

Scholar to James W. MacDonald 67k

Popular Question to Matthew Thornton ▴ 380