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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
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Michael Love
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You just need the mouse identifier (controls baseline) and the group specific allelic effect.
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Hi Emily,
Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
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You may want to speak with a local statistician, because you don't just want to find the first full rank matrix and run with that if it doe…
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It is fine for your mass spec facility to include blank samples as part of their internal QC, but such samples should not in my opinion be …
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Hm, okay, in building a fake model by hand I think I'm realizing the problem: `mouse` and its variants are ideally acting as basically a ra…
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