Bioconductor Factdesign

Showing : factdesign • reset

votes

replies

1.6k

views

Microarray genefilter affy factDesign Microarray genefilter affy factDesign

updated 16.4 years ago by Denise Scholtens ▴ 70 • written 16.4 years ago by De-Jian ZHAO ▴ 240

votes

replies

1.6k

views

factDesign factDesign

updated 16.4 years ago by rgentleman ★ 5.5k • written 16.4 years ago by Alberto Goldoni ▴ 420

votes

1.2k

views

factDesign factDesign

updated 16.4 years ago by Richard Pearson ▴ 160 • written 16.4 years ago by Alberto Goldoni ▴ 420

votes

replies

3.2k

views

affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 16.4 years ago by James W. MacDonald 68k • written 16.4 years ago by Paolo Innocenti ▴ 320

votes

replies

977

views

factDesign factDesign

16.4 years ago Alberto Goldoni ▴ 420

votes

replies

3.1k

views

affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 16.5 years ago by Paolo Innocenti ▴ 320 • written 16.5 years ago by Gordon Smyth 53k

votes

replies

1.3k

views

affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

16.5 years ago Paolo Innocenti ▴ 320

votes

replies

1.7k

views

Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign

17.4 years ago Glazko, Galina ▴ 350

votes

1.1k

views

factDesign factDesign

updated 21.3 years ago by Jeff Lande ▴ 110 • written 21.3 years ago by Denise Scholtens ▴ 70

votes

replies

1.1k

views

Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess

21.3 years ago Jeff Lande ▴ 110

votes

1.0k

views

factDesign factDesign

updated 21.5 years ago by Denise Scholtens ▴ 40 • written 21.5 years ago by Claire Wilson ▴ 280

votes

1.1k

views

factDesign factDesign

updated 21.5 years ago by Denise Scholtens ▴ 40 • written 21.5 years ago by Claire Wilson ▴ 280

votes

replies

951

views

Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest

21.5 years ago James W. MacDonald 68k

votes

1.6k

views

multtest limma factDesign multtest limma factDesign

updated 21.6 years ago by Jordi Altirriba Gutiérrez ▴ 350 • written 21.6 years ago by Denise Scholtens ▴ 40

votes

replies

1.7k

views

multtest limma factDesign multtest limma factDesign

updated 21.6 years ago by Kasper Daniel Hansen ▴ 630 • written 21.6 years ago by Jordi Altirriba Gutiérrez ▴ 350

votes

replies

1.1k

views

limma factDesign limma factDesign

21.6 years ago Jordi Altirriba Gutiérrez ▴ 350

votes

replies

1.0k

views

GO limma factDesign GO limma factDesign

21.6 years ago Gordon Smyth 53k

17 results • Page 1 of 1

Recent ...

Replies

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k