Bioconductor Factdesign

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Microarray genefilter affy factDesign Microarray genefilter affy factDesign

updated 16.5 years ago by Denise Scholtens ▴ 70 • written 16.5 years ago by De-Jian ZHAO ▴ 240

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factDesign factDesign

updated 16.5 years ago by rgentleman ★ 5.5k • written 16.5 years ago by Alberto Goldoni ▴ 420

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factDesign factDesign

updated 16.5 years ago by Richard Pearson ▴ 160 • written 16.5 years ago by Alberto Goldoni ▴ 420

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 16.5 years ago by James W. MacDonald 68k • written 16.5 years ago by Paolo Innocenti ▴ 320

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990

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factDesign factDesign

16.5 years ago Alberto Goldoni ▴ 420

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 16.6 years ago by Paolo Innocenti ▴ 320 • written 16.6 years ago by Gordon Smyth 53k

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

16.6 years ago Paolo Innocenti ▴ 320

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Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign

17.5 years ago Glazko, Galina ▴ 350

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1.1k

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factDesign factDesign

updated 21.4 years ago by Jeff Lande ▴ 110 • written 21.4 years ago by Denise Scholtens ▴ 70

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Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess

21.4 years ago Jeff Lande ▴ 110

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factDesign factDesign

updated 21.6 years ago by Denise Scholtens ▴ 40 • written 21.6 years ago by Claire Wilson ▴ 280

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factDesign factDesign

updated 21.6 years ago by Denise Scholtens ▴ 40 • written 21.6 years ago by Claire Wilson ▴ 280

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Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest

21.6 years ago James W. MacDonald 68k

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1.6k

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multtest limma factDesign multtest limma factDesign

updated 21.7 years ago by Jordi Altirriba Gutiérrez ▴ 350 • written 21.7 years ago by Denise Scholtens ▴ 40

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multtest limma factDesign multtest limma factDesign

updated 21.7 years ago by Kasper Daniel Hansen ▴ 630 • written 21.7 years ago by Jordi Altirriba Gutiérrez ▴ 350

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limma factDesign limma factDesign

21.7 years ago Jordi Altirriba Gutiérrez ▴ 350

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GO limma factDesign GO limma factDesign

21.7 years ago Gordon Smyth 53k

17 results • Page 1 of 1

Recent ...

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Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130