Bioconductor Factdesign

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Microarray genefilter affy factDesign Microarray genefilter affy factDesign

updated 15.7 years ago by Denise Scholtens ▴ 70 • written 15.7 years ago by De-Jian ZHAO ▴ 240

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factDesign factDesign

updated 15.7 years ago by rgentleman ★ 5.5k • written 15.7 years ago by Alberto Goldoni ▴ 420

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factDesign factDesign

updated 15.7 years ago by Richard Pearson ▴ 160 • written 15.7 years ago by Alberto Goldoni ▴ 420

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 15.7 years ago by James W. MacDonald 67k • written 15.7 years ago by Paolo Innocenti ▴ 320

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911

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factDesign factDesign

15.7 years ago Alberto Goldoni ▴ 420

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

updated 15.8 years ago by Paolo Innocenti ▴ 320 • written 15.8 years ago by Gordon Smyth 52k

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affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova

15.8 years ago Paolo Innocenti ▴ 320

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Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign

16.7 years ago Glazko, Galina ▴ 350

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factDesign factDesign

updated 20.6 years ago by Jeff Lande ▴ 110 • written 20.6 years ago by Denise Scholtens ▴ 70

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Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess

20.6 years ago Jeff Lande ▴ 110

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921

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factDesign factDesign

updated 20.8 years ago by Denise Scholtens ▴ 40 • written 20.8 years ago by Claire Wilson ▴ 280

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970

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factDesign factDesign

updated 20.8 years ago by Denise Scholtens ▴ 40 • written 20.8 years ago by Claire Wilson ▴ 280

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Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest

20.8 years ago James W. MacDonald 67k

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multtest limma factDesign multtest limma factDesign

updated 20.8 years ago by Jordi Altirriba Gutiérrez ▴ 350 • written 20.8 years ago by Denise Scholtens ▴ 40

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multtest limma factDesign multtest limma factDesign

updated 20.8 years ago by Kasper Daniel Hansen ▴ 630 • written 20.8 years ago by Jordi Altirriba Gutiérrez ▴ 350

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limma factDesign limma factDesign

20.8 years ago Jordi Altirriba Gutiérrez ▴ 350

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GO limma factDesign GO limma factDesign

20.9 years ago Gordon Smyth 52k

17 results • Page 1 of 1

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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0

Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…

Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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