Bioconductor Fastmnn

Showing : fastmnn • reset

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1.2k

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fastMNN SingleCellData BatchEffect batchelor

14 months ago José • 0

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1.8k

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scanpy scRNAseq fastmnn r

3.2 years ago Madiha • 0

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1.9k

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batchelor fastMNN scRNAseq

3.4 years ago Guandong Shang ▴ 40

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3.1k

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scater batchelor scRNAseq fastMNN

updated 3.4 years ago by Aaron Lun ★ 29k • written 3.4 years ago by Guandong Shang ▴ 40

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1.7k

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fastmnn batchelor BatchEffect

4.2 years ago p.joshi ▴ 40

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1.8k

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fastmnn scater batchelor

updated 5.5 years ago by Aaron Lun ★ 29k • written 5.5 years ago by ATpoint ★ 5.0k

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932

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fastMNN Interpretation

5.5 years ago mloza ▴ 10

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1.6k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 5.7 years ago by Aaron Lun ★ 29k • written 6.3 years ago by firestar ▴ 20

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2.1k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 5.7 years ago by Aaron Lun ★ 29k • written 5.7 years ago by sorjuelal • 0

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1.8k

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SCRAN fastMNN mnnCorrect

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by tobi • 0

10 results • Page 1 of 1

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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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