Bioconductor Fastmnn

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487

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fastMNN SingleCellData BatchEffect batchelor

8 weeks ago José • 0

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1.4k

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scanpy scRNAseq fastmnn r

2.2 years ago Madiha • 0

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1.5k

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batchelor fastMNN scRNAseq

2.4 years ago Guandong Shang ▴ 40

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2.5k

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scater batchelor scRNAseq fastMNN

updated 2.4 years ago by Aaron Lun ★ 28k • written 2.4 years ago by Guandong Shang ▴ 40

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1.3k

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fastmnn batchelor BatchEffect

3.2 years ago p.joshi ▴ 40

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1.4k

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fastmnn scater batchelor

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by ATpoint ★ 4.6k

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722

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fastMNN Interpretation

4.5 years ago mloza ▴ 10

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1.3k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.7 years ago by Aaron Lun ★ 28k • written 5.3 years ago by firestar ▴ 20

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1.6k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by sorjuelal • 0

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1.6k

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SCRAN fastMNN mnnCorrect

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by tobi • 0

10 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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