Bioconductor Fastmnn

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737

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fastMNN SingleCellData BatchEffect batchelor

5 months ago José • 0

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1.5k

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scanpy scRNAseq fastmnn r

2.5 years ago Madiha • 0

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1.6k

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batchelor fastMNN scRNAseq

2.6 years ago Guandong Shang ▴ 40

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2.6k

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scater batchelor scRNAseq fastMNN

updated 2.6 years ago by Aaron Lun ★ 28k • written 2.6 years ago by Guandong Shang ▴ 40

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1.4k

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fastmnn batchelor BatchEffect

3.5 years ago p.joshi ▴ 40

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1.5k

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fastmnn scater batchelor

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by ATpoint ★ 4.7k

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784

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fastMNN Interpretation

4.8 years ago mloza ▴ 10

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1.4k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 4.9 years ago by Aaron Lun ★ 28k • written 5.6 years ago by firestar ▴ 20

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1.8k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 5.0 years ago by Aaron Lun ★ 28k • written 5.0 years ago by sorjuelal • 0

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1.6k

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SCRAN fastMNN mnnCorrect

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by tobi • 0

10 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k