Bioconductor Fastmnn

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1.1k

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fastMNN SingleCellData BatchEffect batchelor

11 months ago José • 0

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1.7k

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scanpy scRNAseq fastmnn r

3.0 years ago Madiha • 0

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1.8k

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batchelor fastMNN scRNAseq

3.1 years ago Guandong Shang ▴ 40

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2.9k

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scater batchelor scRNAseq fastMNN

updated 3.1 years ago by Aaron Lun ★ 29k • written 3.2 years ago by Guandong Shang ▴ 40

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1.6k

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fastmnn batchelor BatchEffect

4.0 years ago p.joshi ▴ 40

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1.7k

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fastmnn scater batchelor

updated 5.3 years ago by Aaron Lun ★ 29k • written 5.3 years ago by ATpoint ★ 4.9k

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884

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fastMNN Interpretation

5.3 years ago mloza ▴ 10

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1.5k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 5.5 years ago by Aaron Lun ★ 29k • written 6.1 years ago by firestar ▴ 20

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 5.5 years ago by Aaron Lun ★ 29k • written 5.5 years ago by sorjuelal • 0

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1.8k

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SCRAN fastMNN mnnCorrect

updated 7.2 years ago by Aaron Lun ★ 29k • written 7.2 years ago by tobi • 0

10 results • Page 1 of 1

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Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …