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fastmnn
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1.2k
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
14 months ago
José
• 0
0
votes
3
replies
1.8k
views
scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy
scRNAseq
fastmnn
r
3.2 years ago
Madiha
• 0
4
votes
2
replies
1.9k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor
fastMNN
scRNAseq
3.4 years ago
Guandong Shang
▴ 40
0
votes
4
replies
3.1k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater
batchelor
scRNAseq
fastMNN
updated 3.4 years ago by
Aaron Lun
★ 29k • written 3.4 years ago by
Guandong Shang
▴ 40
2
votes
2
replies
1.7k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn
batchelor
BatchEffect
4.3 years ago
p.joshi
▴ 40
3
votes
1
reply
1.8k
views
Scaling option in fastMNN
fastmnn
scater
batchelor
updated 5.5 years ago by
Aaron Lun
★ 29k • written 5.5 years ago by
ATpoint
★ 5.0k
0
votes
0
replies
942
views
fastMNN reconstructed matrix
fastMNN
Interpretation
5.6 years ago
mloza
▴ 10
2
votes
1
reply
1.6k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 5.7 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
firestar
▴ 20
1
vote
2
replies
2.1k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN
CITE-seq
ADT-seq
batchelor
REAP-seq
updated 5.8 years ago by
Aaron Lun
★ 29k • written 5.8 years ago by
sorjuelal
• 0
1
vote
2
replies
1.8k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
tobi
• 0
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