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fastmnn
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
10 months ago
José
• 0
0
votes
3
replies
1.7k
views
scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy
scRNAseq
fastmnn
r
2.9 years ago
Madiha
• 0
4
votes
2
replies
1.8k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor
fastMNN
scRNAseq
3.1 years ago
Guandong Shang
▴ 40
0
votes
4
replies
2.9k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater
batchelor
scRNAseq
fastMNN
updated 3.1 years ago by
Aaron Lun
★ 29k • written 3.1 years ago by
Guandong Shang
▴ 40
2
votes
2
replies
1.6k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn
batchelor
BatchEffect
3.9 years ago
p.joshi
▴ 40
3
votes
1
reply
1.7k
views
Scaling option in fastMNN
fastmnn
scater
batchelor
updated 5.2 years ago by
Aaron Lun
★ 29k • written 5.2 years ago by
ATpoint
★ 4.9k
0
votes
0
replies
870
views
fastMNN reconstructed matrix
fastMNN
Interpretation
5.2 years ago
mloza
▴ 10
2
votes
1
reply
1.5k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 5.4 years ago by
Aaron Lun
★ 29k • written 6.0 years ago by
firestar
▴ 20
1
vote
2
replies
2.0k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN
CITE-seq
ADT-seq
batchelor
REAP-seq
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
sorjuelal
• 0
1
vote
2
replies
1.7k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
tobi
• 0
10 results • Page
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Comment: EuroBioC2024 abstract submission is open!
by
Finnianfly
• 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent
by
Francesco Silvestro
• 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data
by
sum31278
• 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning
by
inadequate.peacock.iiag
• 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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