Bioconductor Featurecount

Showing : featurecount • reset

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578

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featureCount Rsubread HPC

18 months ago kthapa • 0

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1.8k

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DESeq2 FeatureCount

updated 2.6 years ago by ATpoint ★ 4.8k • written 2.6 years ago by Jiayi • 0

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917

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ExomeSeq featureCount

3.4 years ago adR ▴ 40

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2.2k

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featurecount rsubread GenomicAlignments

5.0 years ago Konstantinos Yeles ▴ 80

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3.4k

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dexseq rsubread featureCount software error

updated 5.3 years ago by Yang Liao ▴ 450 • written 5.3 years ago by seung.ho.steven.choi • 0

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2.4k

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featureCount rna-seq gene_id re_gene_id stringtie

updated 6.2 years ago by Wei Shi ★ 3.6k • written 6.2 years ago by IRAIA.MAIALEN • 0

6 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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