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9
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txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files, type = "salmon", tx2gene = tx2gene) : all(file.exists(files)) is n…
deseq2
tximport
file.path
files
file.exists
5.2 years ago • updated 5.1 years ago
Leo K
• 0
0
votes
1
reply
1.9k
views
Merging files with gene expression data
merge
rnaseq
files
updated 7.5 years ago by
jayme.rickman
• 0 • written 7.5 years ago by
BioinfGuru
▴ 30
1
vote
4
replies
1.5k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
4.6 years ago
mohammedtoufiq91
▴ 10
1
vote
2
replies
837
views
Working with compressed fasta files?
files
gzip
4.3 years ago
psschlogl
• 0
0
votes
2
replies
764
views
Online Venn diagram generator where I can paste text files containing gene name lists to get the diagram
Venndiagram
files
text
15 months ago
ratto
• 0
0
votes
1
reply
703
views
MEV and TXT files
Files
TXT
updated 4.5 years ago by
Gordon Smyth
50k • written 4.5 years ago by
ekl
• 0
6 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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