Bioconductor FilterByExpr

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3.2k

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edgeR DESeq2 filterByExpr

written 6 months ago by caroline.zanchi ▴ 10

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1.5k

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DEG edgeR limma voom filterByExpr

updated 23 months ago by Gordon Smyth 53k • written 23 months ago by annikagable • 0

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2.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 2.5 years ago by Gordon Smyth 53k • written 2.5 years ago by mohammedtoufiq91 ▴ 10

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3.5k

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CPM filterByExpr edgeR design model.matrix

2.7 years ago • updated 2.6 years ago mohammedtoufiq91 ▴ 10

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3.4k

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CPM filterByExpr edgeR histogram rowsums

3.0 years ago mohammedtoufiq91 ▴ 10

5 results • Page 1 of 1

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…

Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k

The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…

Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k

The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…

Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k

Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…

Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k

The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …

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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

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Scholar to Gordon Smyth 53k