Bioconductor FilterByExpr

Showing : filterByExpr • reset

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edgeR DESeq2 filterByExpr

written 7 months ago by caroline.zanchi ▴ 10

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1.6k

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DEG edgeR limma voom filterByExpr

updated 2.0 years ago by Gordon Smyth 53k • written 2.0 years ago by annikagable • 0

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2.3k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 2.5 years ago by Gordon Smyth 53k • written 2.5 years ago by mohammedtoufiq91 ▴ 10

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3.5k

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CPM filterByExpr edgeR design model.matrix

2.7 years ago mohammedtoufiq91 ▴ 10

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3.5k

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CPM filterByExpr edgeR histogram rowsums

3.0 years ago mohammedtoufiq91 ▴ 10

5 results • Page 1 of 1

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Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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