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rnaseqDTU
•
reset
2
votes
2
replies
146
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
5 weeks ago
wangziwei0010
• 0
1
vote
5
replies
413
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
4 months ago • updated 3 months ago
ksong
▴ 10
2
votes
7
replies
445
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
11 months ago
rbenel
▴ 20
0
votes
5
replies
351
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
12 months ago
bioinformatic_trainee
• 0
0
votes
1
reply
229
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 21 months ago by
Michael Love
37k • written 21 months ago by
rohitsatyam102
▴ 20
0
votes
1
reply
298
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 2.1 years ago by
Michael Love
37k • written 2.1 years ago by
debatosh das
▴ 10
0
votes
2
replies
303
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 2.2 years ago by
Michael Love
37k • written 2.2 years ago by
dixit.anirudha
• 0
2
votes
2
replies
390
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 3.0 years ago by
Michael Love
37k • written 3.0 years ago by
nicog
• 0
1
vote
3
replies
548
views
Visualization for DE transcripts
rnaseqdtu
3.1 years ago
rbenel
▴ 20
1
vote
1
reply
812
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 3.3 years ago by
Michael Love
37k • written 3.6 years ago by
fiona.dick91
▴ 10
0
votes
11
replies
917
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
3.4 years ago
saddamhusain77
• 0
1
vote
5
replies
1.3k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
fiona.dick91
▴ 10
2
votes
4
replies
948
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
3.5 years ago
d-joester
▴ 20
2
votes
8
replies
641
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
3.6 years ago
rbenel
▴ 20
2
votes
9
replies
1.1k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 3.6 years ago by
Michael Love
37k • written 3.6 years ago by
rbenel
▴ 20
2
votes
2
replies
648
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 3.6 years ago by
Michael Love
37k • written 3.6 years ago by
fiona.dick91
▴ 10
0
votes
3
replies
581
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 3.7 years ago by
Michael Love
37k • written 3.7 years ago by
Jack.Hearn
• 0
1
vote
5
replies
792
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 3.8 years ago by
Michael Love
37k • written 3.8 years ago by
rbenel
▴ 20
18 results • Page
1 of 1
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Replies
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Votes
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
Comment: How to get gene length for RPKM directly from DGEList object in latest edgeR?
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