Bioconductor RnaseqDTU

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fishpond DESeq2 rnaseqDTU

updated 4 months ago by Michael Love 43k • written 4 months ago by muhammadsohailraza • 0

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1.0k

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rnaseqDTU DRIMSeq

2.8 years ago wangziwei0010 ▴ 10

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1.7k

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rnaseqDTU

3.1 years ago • updated 3.0 years ago ksong ▴ 10

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1.8k

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DEXSeq rnaseqDTU

3.7 years ago rbenel ▴ 40

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1.7k

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

3.8 years ago bioinformatic_trainee ▴ 10

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820

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rnaseqDTU

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by rohitsatyam102 ▴ 20

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934

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by debatosh das ▴ 10

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935

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rnaseqDTU

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by dixit.anirudha • 0

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1.1k

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rnaseqDTU

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by nicog • 0

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2.1k

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rnaseqdtu

5.9 years ago rbenel ▴ 40

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1.7k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.0 years ago by Michael Love 43k • written 6.3 years ago by fiona.dick91 ▴ 60

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2.0k

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rnaseqDTU DRIMseq DEXseq rna-seq

6.1 years ago saddamhusain77 • 0

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4.2k

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tximport dtu salmon TPM rnaseqDTU

written 6.1 years ago by fiona.dick91 ▴ 60

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2.0k

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stageR rnaseqDTU DRIMSeq DEXSeq

6.3 years ago d-joester ▴ 20

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1.6k

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rnaseqdtu

6.3 years ago rbenel ▴ 40

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3.0k

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rnaseqDTU dtu

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by rbenel ▴ 40

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1.4k

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DTU DRIMSeq rnaseqDTU

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by fiona.dick91 ▴ 60

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1.4k

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drimseq rnaseqdtu stager

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by Jack.Hearn • 0

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2.0k

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DEXSeq StageR rnaseqDTU

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by rbenel ▴ 40

19 results • Page 1 of 1

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

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