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fitTimeSeries
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time series RNA-seq allowing time offset between individuals
edgeR
deseq2
rna-seq
timecourse
fittimeseries
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
jpsf
• 0
1
vote
4
replies
1.4k
views
error using fitTimeSeries in metagenomeSeq
metagenomeseq
fittimeseries
updated 7.6 years ago by
Joseph Nathaniel Paulson
▴ 280 • written 7.6 years ago by
wijera81
• 0
0
votes
1
reply
923
views
fitTimeSeries possible error
metagenomeseq
fittimeseries
updated 7.8 years ago by
Joseph Nathaniel Paulson
▴ 280 • written 7.8 years ago by
giulia.masetti
• 0
0
votes
2
replies
1.3k
views
edge, timeseries analysis, model specification question
edge
timecourse
fittimeseries
updated 8.5 years ago by
Andrew Bass
• 0 • written 8.5 years ago by
warren.anderson
• 0
2
votes
2
replies
1.3k
views
no timeInterval output using fitTimeSeries
metagenomeSeq
fitTimeSeries
microbiome
9.3 years ago
noelle.noyes
▴ 30
5 results • Page
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Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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