Bioconductor FlowFrame

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flowWorkspace flowCore openCyto flowFrame F-measure

updated 5.4 years ago by Jake Wagner ▴ 310 • written 5.4 years ago by stefankolling+github • 0

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flowcytometry flowSOM flowSET flowFrame

6.4 years ago fabrizio.benedetti.82 • 0

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FCS flowframe flowcore flow cytometry

7.0 years ago vonskopnik ▴ 10

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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Your approach 1 is a bad idea. Subtracting the gene counts won't do what you want to do. I would personally check to see if there is any…

Comment: Can NanoString data be analyzed using DESeq2? by James W. MacDonald 68k

You can always discard, although you can also retain them to check for unexpected differences.

Comment: DESeq2 on NanoString Data by Michael Love 43k

Yes, if I discern a batch from EDA including looking at PCs, sample correlations, etc. It is close to SVA, we discuss both in the workflow…

Comment: DESeq2 on NanoString Data by thkapell ▴ 10

Thanks Michael. To this end, do you routinely use RUV or only when you detect a batch? It looks like it works in a similar fashion to SVA w…

Comment: Can NanoString data be analyzed using DESeq2? by thkapell ▴ 10

Thank you. I agree with your thoughts about the similarities of NanoString with RNA-seq. NanoString though, also has positive, negative pro…

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Can NanoString data be analyzed using DESeq2?

Comment: Are voomByGroup and voomLmFit compatible?

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