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fluidigm
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Combine scRNAseq data for bulk analysis using DESeq2
DESeq2
scRNAseq
Fluidigm
18 months ago
evocanres
• 0
0
votes
1
reply
1.2k
views
Fluidigm data analysis - how to get adj p-values for 96 genes
fluidigm
wilcoxon signed rank test
t.test
adj.p.value
normal distribution
updated 8.0 years ago by
Gordon Smyth
50k • written 8.0 years ago by
dk364
• 0
0
votes
1
reply
1.0k
views
Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
fluidigm
normalization
limma
pcr
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
raf4
▴ 20
0
votes
1
reply
517
views
Limma for Fluidigm high throughput PCR
limma
Limma
Fluidigm
updated 13 months ago by
Gordon Smyth
50k • written 13 months ago by
jms2520
▴ 10
0
votes
0
replies
814
views
HTqPCR for Fluidigm Results
htqpcr
fluidigm
6.2 years ago
rhonce
• 0
0
votes
0
replies
909
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr
bioconductor
fluidigm
biomark
6.2 years ago
reed27
• 0
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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